Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00699 ATGATACCAGCTTATCGCCGTTCAGTATCTTCCCTCATGCCTCTGGATCTTAATCAAGATCAAAACCATGAACTACTTTTCAGTCCTAACTTCCATCACTCCTCTCCTTCCTCTTCTTCATTTTCTTCTCTATCCTATCCTATTCTCTTCAACTCTCCAGATCAAAATCAAGAAGGATCTCACTACTGTGAACCAAAGCAGTTACCAAATATTCATGAAGAGGCTGAGAAGACAATTCCTTGTAGCGGATCATGTGATCATTCAACTGCAGAAACAGAAAAGCAGTGCGAGAGCAGGAAGGTGACAGTTTGGAAGAAAGAAGAAAATCATGAAGCAACGACTGAGGATGGTTCACTGAAGTGGATGTCTTCAAAGATGAGAATGATGAGGAAGATGATGGTTTCGGATCAAGGCAACTCTATGCAGCAGAATGATCAAAAGCAACCATTATCACCGCTTGGAACGGACAATAGCAGCAGCAGCAACAATTATTATTCAAATAACACTACAGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACTCCTCTCTGGAGAAGTGGACCAAGAGGCCCCAAGTCACTTTGCAACGCGTGTGGAATACGACAAAGGAAGGCGAGACGTGCCATGGCTGCAGCATCGGCGAGTGGTACAATTCTGATGGCAACTGAGACATCCGTGAAGCGAAACAAGTTGCAGAAGAAAGAGAAGAAGAACAAGTCCAAAATTGAGTCACCACAACACATGAAAAAGAAGCATAACCTTGAAGCCAAGGCCAAGCCATCAAAAAGTAAAAAGAAATTCGGTTTTGAGGATTTGACATTAAGGCTAAGCAAGAACTTGGCTCTTCAGAAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTGTCTTATGGCCTAGTTCATGGATGA 927 0.4337 MIPAYRRSVSSLMPLDLNQDQNHELLFSPNFHHSSPSSSSFSSLSYPILFNSPDQNQEGSHYCEPKQLPNIHEEAEKTIPCSGSCDHSTAETEKQCESRKVTVWKKEENHEATTEDGSLKWMSSKMRMMRKMMVSDQGNSMQQNDQKQPLSPLGTDNSSSSNNYYSNNTTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAASASGTILMATETSVKRNKLQKKEKKNKSKIESPQHMKKKHNLEAKAKPSKSKKKFGFEDLTLRLSKNLALQKVFPQDEKEAAILLMALSYGLVHG. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00699 308 ProSiteProfiles GATA-type zinc finger domain profile. 168 204 IPR000679 GO:0006355|GO:0043565
Seca12g00699 308 MobiDBLite consensus disorder prediction 228 263 - -
Seca12g00699 308 CDD ZnF_GATA 173 201 IPR000679 GO:0006355|GO:0043565
Seca12g00699 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 209 - -
Seca12g00699 308 FunFam GATA transcription factor 21 168 267 - -
Seca12g00699 308 MobiDBLite consensus disorder prediction 237 252 - -
Seca12g00699 308 ProSitePatterns GATA-type zinc finger domain. 174 199 IPR000679 GO:0006355|GO:0043565
Seca12g00699 308 MobiDBLite consensus disorder prediction 136 164 - -
Seca12g00699 308 Pfam GATA zinc finger 174 207 IPR000679 GO:0006355|GO:0043565
Seca12g00699 308 SMART GATA_3 168 219 IPR000679 GO:0006355|GO:0043565
Seca12g00699 308 Gene3D - 172 210 IPR013088 GO:0006355|GO:0008270
Seca12g00699 308 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00699 Seca-Chr12 6405859 6407437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00699 97 308 C2C2-Gata Transcription Factor Family AT4G26150 43.033 1.33e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca12g00699 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00699 - - gmx:100810698 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00699 12 6405859 6407437 Seca12g00699 12 6405859 6407437 ECH
Seca12g00699 12 6405859 6407437 Seca6g03776 6 105122541 105124099 PCT