Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00696 ATGCCTGTTTCTACCGGTTCTGCTGCTCCAACAGTAGCAGATATTGGTGGAAATCAACCAATTAACAATCCAGCAACTGTAACTGACGCTGCTGGAACTAATCCCCTGCCTCCTCTTCCAATTAATGCGAGGAAGAGGAAACCTAATGCAAGTGGTCCTCGAAGAACTTCATTTGCATGGGACCACTTCACTAAATTACCTGAAACTGAAGTGGCTAGAGACTGTTATCAATTGTACCTAGATGAAAAGATTAAGTTAAAGGCATTCTTTAGGTCAAATTGCACTAGAGTTTCCCTTACAACTGACTGCTGGACTTCCATTCAGAATTTGAATTATCTCACTCTCACTGCACATTTCATTGATAATGAATGGAATTATCAAAAAAGAATTATAAGTTTTTCTGTTATTTCCAATCATAAGGGTGAGACAATAGGAAAGCAAGTTGAGGAAGTTTTGAGAGATTGGGGTCTTAGAAATGTTTTCTGTATTACTGTTGATAACGCCTCATCAAATGACGTAGCTGTTAGTTATTTAAAAAACAGATTAGAAGGTTTTAATGGGCTGGTACTTGGTGGCAAATTCTTACATATGAGGTGTTCTGCCCATATTCTAAACTTGGTAGTGAATGATGGGTTAGGTGATTTGAACCCCTCCATTGGAAACATCAGAAATGCTATTAGATATGTGAGGTCTTCACCTCAAAGGCTTGCAAAATTTAAAGAGTGCATTGAGATTTCTAAAATCTCTTGCAAAAAACTGGTATGTCTTGATGTGCCCACAAGGTGGAACTCCACATACTTGATGTTAGAGACTGCTGAAATGTATCAAGCTGCATTTGAGAGGCTGTTATTTGAGGATACTACTTTTATGGGTTGTTTTGGGACAGATTCTCCCCCTTCAAGTCGGGATTGGGAAAAAGCGAGGGCTTTCATTAAATTTCTTAAAATTTTCTATGATGCAACCAACTGTTTTTCTGCTTCTGTCCATGTCACTATACATGCTGCCTTTCATCAGTTAGCTTTGATTTACACTGAGTTGCAACAATCCTCTATGAATATGAATTCTCTTTTTGCTAAAATGGGTATGGACATGAAAAAAAAATATGACAAATATTGGGGTAATGTGCTCAACATCAACCAACTTCTTTATTTTGGGGTAGTCGTTGATCCAAGATATAAGCTTCGGTATGTGGAATGGTCTTTTAAGGGCATGTACAATGATAACCCGAGTTTTTGTGATGAGTTGTGCTCTAGTGTGAAACAGAATTTGTTTAGATTATATTCTTGGTATGTTCAATTCCATGAGCTGCAAAATAGGACTGCACAATCCGCTTCGAATCCGTTGCAAGTGAGTTCACATGAAAGATCCAGCCCTTCTGAAATTCCTACTCATGTAGCTAGGACAGATGCCTTTAGACAACACTTGCAGGAGCAGAACTCAATTGACCAAAAGAATGAACTTGAGAGGTACCTTAGTGAATCATGTGTTGATGGGGGTGATACATTTGATTTGCTTCTATGGTGGAAACAGAACTGCTCTCGTTTCCCTATATTGTCAACCATGGCTAGGGATGTCCTTGCTGTTCCGGTTTCTACTGTGGCATCCGAGAGTGCATTTAGTACTGGTGGAAGGGTATTGGATGTGTTTAGAAGTTCATTAAGGCCAGAAATGACTGAGGCCTTGATATGCGCACAAAACTGGATTAGGCCTTCTCTTTACCAATTCAAAGACCTTAACATTAATGAGGACCTGGATATCTCTGAAGAAATATTAACAGAACTTCAACGAAGAGGTGGAGGATCTACAGCTGAACCTGGATCCTGTAGTACTGCAATGCCACCATCATCTCAGTCACAGCCAATTATTGGCTTTTTGCTATACATGTTTTTTGGACCTAGAAGGAACCTTCGCAACAAAGAAGGAAGTAGATGTAGAGAACGCGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGATTTTCAGGGGGTTGACTTATATCCACACCGTTCCTGGCGTTTGCCACAGAGATTTGAAGCCTCAAACTATACTGGTTGATCCTCTTACACACCAAGTTAAGCTGTGTGATTTTGGAAGTGCAAAAGTGCTAGAACTAGCTCACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAATCGGCCGAAGCACATTTTACCAAGATCACTTACTGAACCTGGTGCAACTCCTGCACCCCCTGCTCCTACTTCAACTCCAGCTCAGGCACCTGTGCCTGCACTGCTGCCAGTTCCTGCTACTAATGTTGCTGTGACAACATCATCAACTCAAGCTCCTTCATCAATGCCATATGGTTGTTTCCTGTCCAGTCCACTACTTCAATGGCTATCAAATATGGGAATGCAGGATAAAAGCAAATGA 2400 0.4042 MPVSTGSAAPTVADIGGNQPINNPATVTDAAGTNPLPPLPINARKRKPNASGPRRTSFAWDHFTKLPETEVARDCYQLYLDEKIKLKAFFRSNCTRVSLTTDCWTSIQNLNYLTLTAHFIDNEWNYQKRIISFSVISNHKGETIGKQVEEVLRDWGLRNVFCITVDNASSNDVAVSYLKNRLEGFNGLVLGGKFLHMRCSAHILNLVVNDGLGDLNPSIGNIRNAIRYVRSSPQRLAKFKECIEISKISCKKLVCLDVPTRWNSTYLMLETAEMYQAAFERLLFEDTTFMGCFGTDSPPSSRDWEKARAFIKFLKIFYDATNCFSASVHVTIHAAFHQLALIYTELQQSSMNMNSLFAKMGMDMKKKYDKYWGNVLNINQLLYFGVVVDPRYKLRYVEWSFKGMYNDNPSFCDELCSSVKQNLFRLYSWYVQFHELQNRTAQSASNPLQVSSHERSSPSEIPTHVARTDAFRQHLQEQNSIDQKNELERYLSESCVDGGDTFDLLLWWKQNCSRFPILSTMARDVLAVPVSTVASESAFSTGGRVLDVFRSSLRPEMTEALICAQNWIRPSLYQFKDLNINEDLDISEEILTELQRRGGGSTAEPGSCSTAMPPSSQSQPIIGFLLYMFFGPRRNLRNKEGSRCRERVVGTGSFGIVFQIFRGLTYIHTVPGVCHRDLKPQTILVDPLTHQVKLCDFGSAKVLELAHRQQFYFWKNYRNNRPKHILPRSLTEPGATPAPPAPTSTPAQAPVPALLPVPATNVAVTTSSTQAPSSMPYGCFLSSPLLQWLSNMGMQDKSK. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00696 799 MobiDBLite consensus disorder prediction 733 752 - -
Seca12g00696 799 Pfam hAT family C-terminal dimerisation region 486 568 IPR008906 GO:0046983
Seca12g00696 799 PANTHER BED FINGER-RELATED 74 570 IPR045259 -
Seca12g00696 799 Pfam Protein kinase domain 656 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00696 799 MobiDBLite consensus disorder prediction 16 30 - -
Seca12g00696 799 MobiDBLite consensus disorder prediction 725 752 - -
Seca12g00696 799 Pfam Domain of unknown function (DUF4413) 325 427 IPR025525 GO:0003677
Seca12g00696 799 SUPERFAMILY Ribonuclease H-like 94 569 IPR012337 -
Seca12g00696 799 MobiDBLite consensus disorder prediction 595 616 - -
Seca12g00696 799 ProSiteProfiles Protein kinase domain profile. 490 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00696 799 MobiDBLite consensus disorder prediction 602 616 - -
Seca12g00696 799 SUPERFAMILY Protein kinase-like (PK-like) 656 706 IPR011009 -
Seca12g00696 799 MobiDBLite consensus disorder prediction 1 55 - -
Seca12g00696 799 Gene3D Transferase(Phosphotransferase) domain 1 616 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00696 Seca-Chr12 6360861 6365394 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00696 657 708 Core Cell Cycle Gene Families AT3G48750 46.154 4.78e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca12g00696 DUF4413 5.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00696 - - mtr:112416111 665.225