Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00693 ATGGCCCCTAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTCAATCAGCTCTTCAAACGCGTCTCGTCGGTGAACAAATCGGCAGGGCCATTCGACGCGCTCTTGTGCGTGGGTCAGTTCTTCCCGGACTCACCTGAGCTGGTGGATGAGTTGATGGCATACATCGAAGGTGGCTCACAGATTCCCCTCCCAACCTACTTCATCGGCGACTACGGCGTCGCTGCCCCTAAAGTTTTGTTGGCAGCTTCCAAGGACTCCGCCAACCGTGGTTTCAAAATGGACGGCTTGAAGGTTTGCCATAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCTCCCTCTTGGGGTTATCCGTGGCCTATTTATCTGGTAGGAAATCGTCAAATGTTCAACAGTTTGGAACTTATAGCCAAGATGATATTGATGCTTTGCGAGCAATAGCTGAGGAACCTGGAACTGTTGATTTGTTCTTGACTAACGAATGGCCAAGTGGGGTCACAAATAGAGCAGCTACTTCAGACATTCCTGCCGGATTCTCAGATTCTATAGGCAGTGATTCAACCATATCAGAGTTAGTACAAGAGATTAAACCACGCTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGTGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGATTCATAGGGCTTGCATCTGTTGGAAATAGAGATAAGCAGAAATTTATCCATGCAATTTCTCCAACACCTGCATCCACCATGTCTTCGACTGAGATTTCCATGAAAACCACAAATACCACCTTATCTCCATACACATTTGTGGAGAAAAGAACTTCTCCAAAGGATACCACAAAGAGATCTAGTGATGGTATTTCTGATTCTCAATATTGGAGATATGATGTTTCTCAAAAACGACATAAACATGAAGCTGGAGATAGTGATAAGATGTGTTTCAAATTTGTATCTTCCGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATATGGATGCAAGGGAGCAATGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGCGAAAGGGGTCCGGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGGTGATAGGCATCCTTCCAGGAGGCCTGGATCTGAAACTAGGTCTAGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCGCATTTAATCATAAGCATTGGGGAAAATTACTATTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTGCTGATAATACCAGTTGAGCATATGCCAAGTACCTTATCCATGTCTTCTGAATCTGAACTTGAGATCTTAAAGTTTCAGAATAGTCTCAAGAGGTACTGCAAGAATCAAGAAAAGGAAGTCATCTTTTTTGAGTGGATTTCCATACGTAGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTAATGGTTGAAAAAGTATTCAATTTAGCTGCACAAAAGTTGGGATTTAAATTTGTGGCAAAGAAATTTGATAACATTTCTGATGGAAGAAAGTTTTTGAAGACACAAATTGATGGGAATTCAAGCTTGTTCTATGCTGAAGTCCCAGGAGGCACAATTCTACTGCATCATGTTGAGGAGAAAGAGAGATTTCCTGCCCAATTTGGACGTGAGGTAGCCTTCTAA 1701 0.4303 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPELVDELMAYIEGGSQIPLPTYFIGDYGVAAPKVLLAASKDSANRGFKMDGLKVCHNLYWLKGSGKFSLLGLSVAYLSGRKSSNVQQFGTYSQDDIDALRAIAEEPGTVDLFLTNEWPSGVTNRAATSDIPAGFSDSIGSDSTISELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEISMKTTNTTLSPYTFVEKRTSPKDTTKRSSDGISDSQYWRYDVSQKRHKHEAGDSDKMCFKFVSSGSCPRGEKCNFRHDMDAREQCMRGVCFDFLNKGKCERGPDCNFKHSLQDEGDRHPSRRPGSETRSSRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMSSESELEILKFQNSLKRYCKNQEKEVIFFEWISIRSTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFKFVAKKFDNISDGRKFLKTQIDGNSSLFYAEVPGGTILLHHVEEKERFPAQFGREVAF. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00693 566 Pfam Protein similar to CwfJ C-terminus 1 385 499 IPR006768 -
Seca12g00693 566 CDD MPP_CWF19_N 6 232 - -
Seca12g00693 566 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 564 IPR040194 -
Seca12g00693 566 Gene3D - 298 371 - -
Seca12g00693 566 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Seca12g00693 566 ProSiteProfiles Zinc finger C3H1-type profile. 346 369 IPR000571 GO:0046872
Seca12g00693 566 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Seca12g00693 566 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Seca12g00693 566 Gene3D - 386 507 IPR036265 -
Seca12g00693 566 SUPERFAMILY CCCH zinc finger 313 338 IPR036855 GO:0046872
Seca12g00693 566 SUPERFAMILY HIT-like 390 463 IPR036265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00693 Seca-Chr12 6327221 6336471 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g00693 CwfJ_C_1 1.2e-37 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00693 K24939 - gmx:100782106 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00693 12 6327221 6336471 Seca12g00693 12 6327221 6336471 ECH