Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00686 ATGGCGTCTTCTCCCTCCCACAAGCCGCCAGAACTGATTTTCTCCGCTCTCTATTGCAATCTTTATTTTAGCTGTGTTCCTGGACTCAAATTAAAGTCATGGGAAGCAAGGATTAAGAGTGCTATTTTCATGGGGTGCAACAAAGGGGAAATTGAGCTTGGCTTCTCCAATATTATATCTCAAGGTGGTGACATTCAGTTTCCAGAAGTTCTCTCTTTACAGTCCCAATATTCAATTGATGATGATCAGATTAATATTATTGGACCTTCATCATCTAATTCATCTTCTTTCAAATCATTATCTACAGCAGGAGAAGCTACTGCTTTCAAGAGATATGATAGAAGCACAAACATAACATCTACTTCCAAAATGGGATCCCAAAGGCAAAGCATGGTGAATAGGTCAATTGCACTCTTGAGAGGCTTAAATTCAATGAGAGAACGCATTCAAGCAACCACACGTCCCAATAGTATCCAACTTCTTCATACGATATCAGAGCGAAGAAGGCGTGAAAAACTCAATGACAATTTTCAGGCACTCAGAGCACTACTTCCTCCGGGAACTAAGACAATGAGCTCCTTAATAGCTGAAATTGAAGAGCTTCACTTGAAAAATCACAAGTTGATGGCACTTTTGTCAGCCAAAGAATTAGAAGAAAACAAAGGAAATGAAAGGATGAATATTGCTGGGGTTTCAAATGTAAATGTAAATGTAGTGGAGGCAGCGAGCTCATCATCAGAAGAGAGAATGGTGGAGTTACAAGTGAGTGTGAGAGGAGAAGTAAGTTCTCATTCTCAAGCTGATATTTTGATTCGCTTATTGGAATTCTTGAAAGGGGTTCAGAATATTGTGAGTTTGATTTCCATGGAGGCAAACACACATATTACACAAGGGACACTCATCAATCAATTAACCTTCAGGCTTAGGAGAATTGAGGGAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTAAGGAGAGTTGTTGCTGACCTGCTACAACATAAATATGACAATTTAAACCAATAG 1029 0.3975 MASSPSHKPPELIFSALYCNLYFSCVPGLKLKSWEARIKSAIFMGCNKGEIELGFSNIISQGGDIQFPEVLSLQSQYSIDDDQINIIGPSSSNSSSFKSLSTAGEATAFKRYDRSTNITSTSKMGSQRQSMVNRSIALLRGLNSMRERIQATTRPNSIQLLHTISERRRREKLNDNFQALRALLPPGTKTMSSLIAEIEELHLKNHKLMALLSAKELEENKGNERMNIAGVSNVNVNVVEAASSSSEERMVELQVSVRGEVSSHSQADILIRLLEFLKGVQNIVSLISMEANTHITQGTLINQLTFRLRRIEGSEWDESAFQEAVRRVVADLLQHKYDNLNQ. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00686 342 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 90 331 IPR044658 -
Seca12g00686 342 Pfam Helix-loop-helix DNA-binding domain 162 197 IPR011598 GO:0046983
Seca12g00686 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Seca12g00686 342 CDD bHLH_AtbHLH_like 162 208 IPR045239 -
Seca12g00686 342 Gene3D - 160 284 IPR036638 GO:0046983
Seca12g00686 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 295 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00686 Seca-Chr12 6225383 6229680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00686 104 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.288 1.33e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g00686 HLH 3.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00686 - - gmx:102667064 219.935