Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00683 ATGGCGGTCGCTCACGGTGGCTGTGGCGGTTGTTATCCCCTCTCATCGTCGACGCCTATTCACGAGGCACTACTGAATAGTAGAACTAGTGCCATGGAAGATGATGAACAAGTAGCCAGAGTCAAAGCAGAGTTATTGGATGACAGTGCTTGTTCCAACGACGACGTTTTGAGTGAAAGGAAGGACTCCGAAGTGACTGAAGAAGAGGGCGCTGCAGACTTACCTCTTCATATCAAAGAAGAAGTTGCCGACGCTGGCGTTACAGGTCCGTCGATTGAATTGCCAAAACCAATGGAAGGGTTGCACGAGGTGGGCCCACCACCCTTCCTCAAGAAAACCTTCGAAATGGTGGAGGATCCGGAAACCGACCCGATTGTGTCATGGAGCCCGAGTCGTGACAGTTTCATCGTTTGGGATTCTCACGAATTCTCCAAAATCCTTCTCCCCAAATACTTCAAGCACAGCAATTTCTCTAGCTTCATTCGCCAACTCAACACCTATGGCTTTAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCAAATGAAGGATTCCAAGGAGGGAAGAAGCACTTGTTAAAGAACATAAGGAGGAGAAGTAAGTATAACAAACTGCATCAAGGGACATTCAATTTGATGAAGCCTGGCTTGGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATATTGAAAGTGGAAATTCTGAAGCTGAGGCAGCAGCAAGAGAATTCGCATATTCAGCTCACAAATGTTCAGGAGCGAATTCGGTGTGCAGAGTTGAAGCAGTATCAGATGATATTTTTCCTTACCAGAATGGCTAGAAGGCCTTCGTTTGTTGAGCAGTTAATCCAAAAGGCTAAGCGAAGAAGAGAGCTTGATGGTGCTGACATGGTTAAGAGGCCTAGATTGCTTGGAACTCAGTGCCCTGTAACATTCCCTAAGAAGGCCATGGAGACAATCCCTAATGTTGATTATGGTTATAGGCACCAAGGTCGTGAACAATTCGCTACATTGCAGTCTGAGCTGAATGGACTCATGTCTGAAACTGTGAACAATAGCAGAATGGAACCCCCAGGTCCCTCTCCCTTGGAAAATGAATTATGCAGCTCTGTACAGGGATTAAGGACCTATGGTTCTAGAGCAAGTGGGCAAGATGTTTCTTCTGCTTATCATGTTATGTCAGAAAAACTACTGGGGGAAAATTCTGGTGTGGATGAAGAACTAGATGTGAATGACTCGAATATCTATCTTGAATTAGAGGATTTGATAAGTAAGCCAGCAGATTGGGTTGGATCTGCAAGTGGATTAGTGGGACAAACTAGTTGA 1326 0.4563 MAVAHGGCGGCYPLSSSTPIHEALLNSRTSAMEDDEQVARVKAELLDDSACSNDDVLSERKDSEVTEEEGAADLPLHIKEEVADAGVTGPSIELPKPMEGLHEVGPPPFLKKTFEMVEDPETDPIVSWSPSRDSFIVWDSHEFSKILLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGTFNLMKPGLEAEVEKLKKDQNILKVEILKLRQQQENSHIQLTNVQERIRCAELKQYQMIFFLTRMARRPSFVEQLIQKAKRRRELDGADMVKRPRLLGTQCPVTFPKKAMETIPNVDYGYRHQGREQFATLQSELNGLMSETVNNSRMEPPGPSPLENELCSSVQGLRTYGSRASGQDVSSAYHVMSEKLLGENSGVDEELDVNDSNIYLELEDLISKPADWVGSASGLVGQTS. 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00683 441 PRINTS Heat shock factor (HSF) domain signature 109 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g00683 441 PRINTS Heat shock factor (HSF) domain signature 160 172 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g00683 441 PRINTS Heat shock factor (HSF) domain signature 147 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g00683 441 ProSitePatterns HSF-type DNA-binding domain signature. 148 172 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g00683 441 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 95 328 IPR027725 -
Seca12g00683 441 SMART hsfneu3 105 198 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g00683 441 Coils Coil 220 240 - -
Seca12g00683 441 Pfam HSF-type DNA-binding 109 198 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g00683 441 SUPERFAMILY "Winged helix" DNA-binding domain 105 198 IPR036390 -
Seca12g00683 441 FunFam Heat shock transcription factor 1 102 199 - -
Seca12g00683 441 Gene3D - 102 199 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00683 Seca-Chr12 6191343 6193348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00683 95 306 HSF AT2G26150 54.338 3.72e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca12g00683 HSF_DNA-bind 1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00683 K09419 - gmx:100818430 613.224