Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00681 ATGGAACCTCGTGTCGGGAATAAGTTTCGTTTGGGTCGGAAGATCGGTAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACTAACGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGTTGTACAGAATTCTCCAGGGAGGAACTGGAATTCCAAATGTTAGATGGTTTGGAGTGGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTTGGGCCTAGTCTTGAAGATCTATTTAATTTTTGTAGTAGAAAGCTATCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGGTAGGCCCTTGTTGGCTTTGTAAACTAATTAACCGTGTTGAGTTTATTCATTCTAAATCATTTCTACATCGGGATATCAAACCGGATAATTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTCTATGCTATTGATTTTGGTTTGGCTAAGAAATACAGAGATAGTACAACTCATCAACACATTCCGTACAGGGAAAATAAGAATTTGACCGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATTTAGAGTCTCTTGGTTATGTTTTGATTTGTAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACAAAGAAACAGAAGTATGAGAAAATCAGTGAGAAAAAGGTTTCTACCTCAATTGAAGCATTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTACTGCCGATCATTAAGGTTTGACGATAAGCCAGATTATGCTTACCTAAAAAGGATATTCCGTGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTGTTTGACTGGACCATCTTGAAGTATCAGCAATCACAGCTTGCCACACCTCCAGCACGGGCCATTGGTCCTAGTGCTGGAACCAGTTCTGGAATGCCACCGGCTGTTAATAATGCTGATAGACATACAGGGGGGGAAGAAGGGCGACCTCCTGGTTTGGTTTCAGTGGATTCCTCGAGGCGCAGAATGTCAGGGCCCATTTTAAATACTCTATCAGGTGCCAATATCTTGGGTCAGTCAAGTGGATCATCTAGGCGAGTTGCTGTTTCTAATAGCCGTGATGCATTTGTTGGTGCTGAATCAGATGTTCGTACTCGTACTGCTGAGGCTAGTCCCGGAGCAGCACACAGAATTTTGAGTGGCCAAAGAAGTTCACCAATTGGATCTTCTGATCCCAAGAGAGTAGTATCATCTGGGAGGAATGCTTCCCATGTAAAAAATTATGACACTGCCCTTAGGGGCATGGAGGGTTTGCAGTTAGACAATGATGAGAGGACCCATTACTGA 1380 0.4239 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMVGPCWLCKLINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSTTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLICSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPARAIGPSAGTSSGMPPAVNNADRHTGGEEGRPPGLVSVDSSRRRMSGPILNTLSGANILGQSSGSSRRVAVSNSRDAFVGAESDVRTRTAEASPGAAHRILSGQRSSPIGSSDPKRVVSSGRNASHVKNYDTALRGMEGLQLDNDERTHY. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00681 459 MobiDBLite consensus disorder prediction 413 433 - -
Seca12g00681 459 FunFam Putative Casein kinase I 1 85 - -
Seca12g00681 459 Pfam Protein kinase domain 10 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00681 459 FunFam Casein kinase I isoform delta-like 1 313 - -
Seca12g00681 459 MobiDBLite consensus disorder prediction 309 350 - -
Seca12g00681 459 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Seca12g00681 459 SUPERFAMILY Protein kinase-like (PK-like) 5 295 IPR011009 -
Seca12g00681 459 CDD STKc_CK1_delta_epsilon 8 287 - -
Seca12g00681 459 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Seca12g00681 459 MobiDBLite consensus disorder prediction 394 433 - -
Seca12g00681 459 SMART serkin_6 9 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00681 459 PANTHER CASEIN KINASE-RELATED 9 405 - -
Seca12g00681 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Seca12g00681 459 ProSiteProfiles Protein kinase domain profile. 9 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00681 Seca-Chr12 6151115 6158021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00681 7 214 EF-hand Containing Proteins AT2G17890 26.606 3.18e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Seca12g00681 Pkinase 2.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00681 K02218 - gmx:100785851 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00681 12 6151115 6158021 Seca12g00681 12 6151115 6158021 ECH
Seca12g00681 12 6151115 6158021 Seca6g03756 6 104860908 104866812 PCT