Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00675 ATGTCCACACCGAGATCGGTTGCTGTTGCCGTCAGTGGCGGCTCCGGCGCCGCCAAGGGTAGCCGGAGAGCCGTCCAGTGGGCGGTGGATAATCTCGTTCCTCAAGCAGATAGGTTCATCTTAGTTCACGTCATCCCCACAATCACTTCAATTGCAACCCCAACTGGAGATTATATTCCCATTTCGGAAGCAGATGCTGATGCCTTTGCAGCTTATGTGGAGGATGTGAAACAAAAGTCTGAACAAATCTTTGTTTCATTCAAGAAGCTCTATGAATCAGACATGATGGAAACCTTGTTACTGGAAGATGACAATCCTGCAAATGCACTTCTTAGCTTTGTCTCTGAATCTGGGATCCAAATTTTAGTGCTGGGTTCTGACTCTTCAAATTTTATTACGAGGAAGCTAAAAGGACCTGGAATACCAACTACCATTCTAAGATGTGCTCCTGACAGCTGTGATGTATATGTTGTATCTAGAGACAAAATCATATCAAAGTTAGCTGATTCTTCATCTTCATATTCTCATGAGACTAGCCCAAGGTACTTCATGTCTGCTCAAGTAAATAAATCAGACAATAGTGCTGGCATTGGTGGAGAAATGTCTGGAATTAATTCATCCCCATTAGAACCTAAAATTCTAAAAACTTTCAGATTTTTGTCAATATCAGAGCGTAGTTACGTTGGTCTGCAAACAACTAGTCGTAGGGATTCTTTTGAACATTATACCAAAAATGAAGAAGAAAATCCAGAAAACATTGGAGATGATGTTGAAGCTTTTAGCCTCCACTCATTTGATGCCGTTTCTTCTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAATGGAACGGCTGCAGGTGGAGTTGCAGAATACTATTGCTATGTATAAACAGGTTTGTGAAGACTTGGTTCATGTTCAAAGCAAGGCTGTTTTACTTTCTTCTGAGTCTCTTGAAGAAGCTCAAAGAATAAATGATTCCCTGAAAAGAGAAGAGACTTTGAGAAAGATTGCTGCTGAAGAGAAAGCAAAGTATTTAAAAGTCACAAAGGAACTTGAGGAGGCAAAAAATATGCTTGCCAAAGAATCATATGAAAGACAGATTGCTGAACTTAATGTCCTTAAAGAATCCATTGAAAGACAGAGAATTGTTGATACATTGCTCCCAAATGACAGGAGATACAGAAAATACACCATGGATGAACTCAAGACTGCGACAAACAACTTCTCTGAGAAATTGAGAATTGGTGAGGGAGGGTATGGGAAAGTTTACAAGTGCAATCTTGATCACACATCAGTAGCTGTGAAGGTTTTGAATCACGACTCAATCAACAAAAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAGCTACACCATCCAAATATGGTTTTGTTACTTGGAGCCTGTCCTGATAAGGGCTGCCTTGTTTATGAATACCTGGAAAATGGAAGCCTAGAAGACTATATTCTCAAAAAAAATGGAAAACCACCACTTCCTTGGTTTGTTCGATTTCGTATAGTTTTTGAAATGGCTTGTGGACTCTCATTCTTGCATAATTGGAAGCCAGAGCCTATTGTTCACCGCGATATAAAACCTGGCAATATCTTGTTGGACAGAAATTATGTGAGCAAAATTTCAGATGTTGGACTGGCCAAACTCCTTTCAGATGTTGTGCCTGACAATATCACAGAGTACAGAGAATCAGTGCTTGCTGGTACCCTGCATTACATGGACCCAGAGTATCAAAGAACTGGCACTGTACGACCAAAATCAGATGTATATGCTTATGGAGTTATAGCTCTCCAGTTGATAACTGCTCGCCATGCACGTGGACTCATTTTGACTGTTGAAGATGCAATTACAAATGGCTCCTTCAGTGACATTTTAGATAAATCAGCTGGAGATTGGCCATTGGATGAGACATTGGAATTGGCTCAAATTGCCCTTAAATGTGTTGCACTTAGATGCAGAGATAGACCAGAACTTGATGCTGAAGTTCTTCCACTGCTCACAAGACTTTCTGATAAGGCAAATGCTAGTGAAAGGATAGGAAGAAATAATATATGCACGCCAAGCCAGTATTATTGTCCAATCCTTCAGGTTTAA 2112 0.4034 MSTPRSVAVAVSGGSGAAKGSRRAVQWAVDNLVPQADRFILVHVIPTITSIATPTGDYIPISEADADAFAAYVEDVKQKSEQIFVSFKKLYESDMMETLLLEDDNPANALLSFVSESGIQILVLGSDSSNFITRKLKGPGIPTTILRCAPDSCDVYVVSRDKIISKLADSSSSYSHETSPRYFMSAQVNKSDNSAGIGGEMSGINSSPLEPKILKTFRFLSISERSYVGLQTTSRRDSFEHYTKNEEENPENIGDDVEAFSLHSFDAVSSAQREQLVMQEEMERLQVELQNTIAMYKQVCEDLVHVQSKAVLLSSESLEEAQRINDSLKREETLRKIAAEEKAKYLKVTKELEEAKNMLAKESYERQIAELNVLKESIERQRIVDTLLPNDRRYRKYTMDELKTATNNFSEKLRIGEGGYGKVYKCNLDHTSVAVKVLNHDSINKKEEFLKEVEILSQLHHPNMVLLLGACPDKGCLVYEYLENGSLEDYILKKNGKPPLPWFVRFRIVFEMACGLSFLHNWKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLSDVVPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAYGVIALQLITARHARGLILTVEDAITNGSFSDILDKSAGDWPLDETLELAQIALKCVALRCRDRPELDAEVLPLLTRLSDKANASERIGRNNICTPSQYYCPILQV. 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00675 703 ProSitePatterns Protein kinases ATP-binding region signature. 415 436 IPR017441 GO:0005524
Seca12g00675 703 CDD STK_N 6 160 - -
Seca12g00675 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Seca12g00675 703 SUPERFAMILY Protein kinase-like (PK-like) 392 664 IPR011009 -
Seca12g00675 703 Gene3D HUPs 4 166 IPR014729 -
Seca12g00675 703 Gene3D Phosphorylase Kinase; domain 1 389 481 - -
Seca12g00675 703 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 5 161 - -
Seca12g00675 703 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 382 481 - -
Seca12g00675 703 Gene3D Transferase(Phosphotransferase) domain 1 482 693 - -
Seca12g00675 703 Pfam Universal stress protein family 20 138 IPR006016 -
Seca12g00675 703 Coils Coil 268 288 - -
Seca12g00675 703 ProSiteProfiles Protein kinase domain profile. 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00675 703 Coils Coil 338 381 - -
Seca12g00675 703 PANTHER OS02G0152300 PROTEIN 7 682 - -
Seca12g00675 703 SMART serkin_6 409 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00675 703 Pfam Protein tyrosine and serine/threonine kinase 414 665 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00675 Seca-Chr12 6085028 6090953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00675 6 702 Plant U-box Gene Family AT5G57035 51.105 0.0 730
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca12g00675 PK_Tyr_Ser-Thr 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00675 - - gmx:100805896 1138.64