Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00671 ATGGAGGAAATATCTTCCAGTGTTGCAGTGCCATTTACACTTGGAAACTTGATTCAAAAGGAGTCTGCAGTGACGACCCACATGGAGATAACTGGGATAAAGCTTATGGCAAATACAGCAGCAGCTTTAATATTGAGTCCTGCTGTTGAGGGTAGTCAATCATATTCTGTTGGAAGTGAAAACCATGCTGATGTTAGTCTGCAACACCAAATTACTGTTTCTGCAGAGGTTAAGGAAAATCAAGTTGGAGGTGTCTCAGAAATGGTTATTGAATGTGAAAGTAATTGGGTCTTGACTGAAAGCCATGATGAGGCAAGGAAGGAAGATGAATTCATGTTAGCTGTAGATTTTCAGTGTCTACATAATCCAAACTCTCAATCTGTGGCTAATGACAAAAGTGGTCCTTGTGGGGAGGAAGATGCATCCTTGAAGACTATTTATTCTGAAATTGATTCACCAATTATTATCAAGGTTGATGATAATACCTATGGTAAGTCTGGTATAAACGAGCCTCTTCCAACATTAAAGCCAGAGCAGAACTCAGTTTCTGTTGCAATGGATATTGAGAGTGAAAATCGAAGTGGTTCAGATGAGTCTGATCCACAACTATCTTCTGTGCTTCTTGATCAGTTGCCAAAGGAGAATAGAACATGGAGAACAAGCTACCAGAGTGCTTTGGAATTGAGTAATGGCCCTCTTTGGGGTTCCTCATCAATTTGTGGAAATAGACAGGAGATGGAAGATGCTATTTTTGTTAAGCCTCAACTTTTTCAAGTACCTTCACAGATGTTAATGAATGACCATGTGAATGAAAACACACAATGCTCACTAGCCCACTTTTTTGGTGTCTATGATGGACATGGGGGTTTTCAGGTTGCTAATTACTGCCGGGAGCGTCTTCATTCAGTGTTGATTGAGGAGATAGAAGCTGCACAATCAAGTTTGGCTGAAACAAATGGGAGAGATGATTGGCAGGACCATTGGAAGAAAGCATTCTCCAATTGTTTTCAGAAAGTAGATGATGAGGTTGGAGGAATTGGTGTTGGTAATAGTGAAAACAACAGTGATGATGGATCTGAGTCAAATATTGAACCTCTTGCTCCTGAGACTGCTGGCTCCACTGCAGTGGTTGCCATTTTAAGTCAAACTCACATAATAGTTGCAAATTGTGGGGATTCAAGAGCTGTCTTGTATCGTGGGAAAGAAGCCCTGCCATTGTCTGCTGATCACAAACCAAATCGAGAGGATGAGCGGGAAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATACCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATATTTGAAACCATGGATAATTCCAGAACCAGAAGTCAATATTGTGCGACGAGAGAAAAATGATGATTGCCTTATTCTAGCAAGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCATGTGATGTTGCAAGGAAGAGAATCCTTCTTTGGCATAAGAAGTATGGCAACAATGGAACAACAGGACAAAGTGAAGGGGTTGATCCTGCAGCTCAATCAGCTGCAGACTATCTATGTAGACTTGCCCTCCACAGAGGAAGCGATGATAACATCTCTGTAATTGTTATAGATTTAAAGGCTCAAAGAAAGTTTAAGAGAAAGGCATAA 1674 0.4092 MEEISSSVAVPFTLGNLIQKESAVTTHMEITGIKLMANTAAALILSPAVEGSQSYSVGSENHADVSLQHQITVSAEVKENQVGGVSEMVIECESNWVLTESHDEARKEDEFMLAVDFQCLHNPNSQSVANDKSGPCGEEDASLKTIYSEIDSPIIIKVDDNTYGKSGINEPLPTLKPEQNSVSVAMDIESENRSGSDESDPQLSSVLLDQLPKENRTWRTSYQSALELSNGPLWGSSSICGNRQEMEDAIFVKPQLFQVPSQMLMNDHVNENTQCSLAHFFGVYDGHGGFQVANYCRERLHSVLIEEIEAAQSSLAETNGRDDWQDHWKKAFSNCFQKVDDEVGGIGVGNSENNSDDGSESNIEPLAPETAGSTAVVAILSQTHIIVANCGDSRAVLYRGKEALPLSADHKPNREDERERIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVRREKNDDCLILASDGLWDVMTNEEACDVARKRILLWHKKYGNNGTTGQSEGVDPAAQSAADYLCRLALHRGSDDNISVIVIDLKAQRKFKRKA. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00671 557 SMART PP2C_4 223 545 IPR001932 -
Seca12g00671 557 CDD PP2Cc 235 547 IPR001932 -
Seca12g00671 557 ProSiteProfiles PPM-type phosphatase domain profile. 233 547 IPR001932 -
Seca12g00671 557 SMART PP2C_SIG_2 264 547 IPR001932 -
Seca12g00671 557 SUPERFAMILY PP2C-like 226 548 IPR036457 -
Seca12g00671 557 FunFam Protein phosphatase 2C 16 221 557 - -
Seca12g00671 557 MobiDBLite consensus disorder prediction 346 366 - -
Seca12g00671 557 Gene3D - 221 557 IPR036457 -
Seca12g00671 557 ProSitePatterns PPM-type phosphatase domain signature. 280 288 IPR000222 GO:0043169
Seca12g00671 557 PANTHER PROTEIN PHOSPHATASE 197 547 IPR015655 GO:0004722|GO:0006470
Seca12g00671 557 Pfam Protein phosphatase 2C 236 540 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00671 Seca-Chr12 6042739 6046129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00671 204 557 PP2C-type Phosphatase Gene Family AT1G17550 55.556 1.81e-135 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00671 K14497 - gmx:100789207 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00671 12 6042739 6046129 Seca12g00671 12 6042739 6046129 ECH