Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00658 ATGTACAATTGTTCACAAATTGATTATAGTCACTCAATGTTTCAGGCTCATGCTCCTTATCCTTATGTTGATCCTTCTTTTGGTGGTTCATTAGTTGCTTATGGACCACATGCTATTAATCAACCCCAAATGTTACCCCAGATGTTGGGATTAGCTTCCACCAGAATTGCATTACCACTTGATCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGAAAGCCATATCTTCATGAGTCTCGTCACCGCCATGCATTGAAGAGGGTTAGGGGATCTGGAGGACGCTTTCTTAGCGCCAAACAGATGCAGCAATCTAATGCTGAACTAATCCATCCAGGCTCAGACCCTGTCAATGTTTATCAAAGGAAAGATGCATCAGAGGTGGAAAGTCATCCCTCAAGAACTGGAGAAAATGCATCTTCTTCTATCACAACTTGCTCTGGCCAAACAAGTCTGTCCAGTAACAGTGTTAATTTTAGGCAGCATGAGCACAAGTTCTTGGGAAACTCTCCAAACATTGGTGGAGCATCACAATGCAGTGGAGGACTCACCTTTGGTGGGGGAATTCAGCAATATGCTCCATTTGGCCGGTAA 669 0.435 MYNCSQIDYSHSMFQAHAPYPYVDPSFGGSLVAYGPHAINQPQMLPQMLGLASTRIALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQMQQSNAELIHPGSDPVNVYQRKDASEVESHPSRTGENASSSITTCSGQTSLSSNSVNFRQHEHKFLGNSPNIGGASQCSGGLTFGGGIQQYAPFGR. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00658 222 MobiDBLite consensus disorder prediction 157 179 - -
Seca12g00658 222 SMART cbf3 63 124 IPR001289 GO:0003700|GO:0006355
Seca12g00658 222 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 67 121 IPR001289 GO:0003700|GO:0006355
Seca12g00658 222 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 187 IPR001289 GO:0003700|GO:0006355
Seca12g00658 222 PRINTS CCAAT-binding transcription factor subunit B signature 98 121 IPR001289 GO:0003700|GO:0006355
Seca12g00658 222 PRINTS CCAAT-binding transcription factor subunit B signature 67 89 IPR001289 GO:0003700|GO:0006355
Seca12g00658 222 Gene3D - 64 126 - -
Seca12g00658 222 ProSiteProfiles NF-YA/HAP2 family profile. 64 124 IPR001289 GO:0003700|GO:0006355
Seca12g00658 222 ProSitePatterns NF-YA/HAP2 subunit signature. 69 89 IPR018362 GO:0003677|GO:0016602
Seca12g00658 222 MobiDBLite consensus disorder prediction 147 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00658 Seca-Chr12 5941629 5945810 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00658 15 130 CCAAT-HAP2 Transcription Factor Family AT1G17590 61.017 1.77e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Seca12g00658 CBFB_NFYA 4.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00658 K08064 - gmx:100792905 337.035
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00658 12 5941629 5945810 Seca12g00658 12 5941629 5945810 ECH