Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00656 ATGCTGACGTGTATAGCTCGTCCCAAGAAACCCGGCAATGACTCACTGAGTAAGCCTGAAGATTCCGATCCGAACAACGCGACAAACGCCGCTAAAAGCCAAGCCATCAAATCCCTAACTTCTCAGTTAAAGGATATGGCGTTGAAGGCATCGGGCGCGTACAAGCATTGCGCCCCGTGCACGGGGCCACAGACGCAGGGTCGACTCAGGAGCAACACCGAGTCGGACGCGGACTCGGATCGGTTCCGATGGTCGTACCGGAGAACCGGAAGCTCGAGCTCGACGACGACGAGGACGTGGGGGAAGGAGATGGAGGCAAGGCTGAAAGGAATTTCGAGCGGGGAAGGGACGCCGAACTCCGCCAGTGGGCGGCGGGTGGAGCCGGTGGTGCTGTTCGTGGAAGAGAATGAACCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACCTTCGTGTCGTTGCCGCGTGGCGGGAACGATCTCAAGCGCATACGATTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTATGATAAGGTCATGGAACTATACAATGTTCAAAGGTTTAACCGCCAAGCATTCCCCCTTCCAACTCCACCAAGGTCTGAAGATGAGAGCTCAAAGCTTGAATCAGCAGAAGACAGCCCTGTAACACCTCCACTAACCAGGGAACGGTTACCTCGTAATGTGTACCGTCCAACAGGGATGGGAATGGGATATTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCCCGGCATTTCTTTGACTCCAATGGTATGAACTCAACCCCTAAAGTCTCCACCATTAGTGCCGCCAAGACAGAGATATCATCAATGGATGCTTCTATTAGAAGTAGCTCATCAAGAGAGGCTGATCGCTCGGGTGATTTATCAATCAGCAATGCTAGTGACTTGGAAACTGAATGGGTTGAGCAGGATGAACCCGGTGTTTACATTACCATCAGAGCTTTACCAGGTGGCATAAGGGAGCTCAGACGAGTCAGGTTCAGCCGAGAAAAGTTTGGGGAAATGCATGCTAGATTATGGTGGGAGGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1122 0.5187 MLTCIARPKKPGNDSLSKPEDSDPNNATNAAKSQAIKSLTSQLKDMALKASGAYKHCAPCTGPQTQGRLRSNTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRVEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEDSPVTPPLTRERLPRNVYRPTGMGMGYSSSDSFDHQSMQSRHFFDSNGMNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDLSISNASDLETEWVEQDEPGVYITIRALPGGIRELRRVRFSREKFGEMHARLWWEENRARIHEQYL. 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00656 373 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
Seca12g00656 373 MobiDBLite consensus disorder prediction 202 232 - -
Seca12g00656 373 MobiDBLite consensus disorder prediction 290 310 - -
Seca12g00656 373 MobiDBLite consensus disorder prediction 1 38 - -
Seca12g00656 373 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 373 IPR044532 -
Seca12g00656 373 MobiDBLite consensus disorder prediction 18 38 - -
Seca12g00656 373 Pfam Transcription factor BRX N-terminal domain 28 60 IPR027988 -
Seca12g00656 373 Pfam Transcription factor regulating root and shoot growth via Pin3 317 372 IPR013591 -
Seca12g00656 373 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
Seca12g00656 373 ProSiteProfiles BRX domain profile. 318 373 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00656 Seca-Chr12 5907547 5913268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00656 1 373 Major Intrinsic Protein MIP AT1G31880 44.872 9.34e-93 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00656 - - gmx:100794109 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00656 12 5907547 5913268 Seca12g00656 12 5907547 5913268 ECH
Seca12g00656 12 5907547 5913268 Seca6g03734 6 104636397 104643584 PCT