Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00653 ATGGGTGATTTTCAAAGCTCATACACAGTGTCTCCCCCTCCTGCTCCATCATCCTCAGATAAGGCTAGCCTAGCCATATTATATTATGGCCTAGTAGTGGTGGGAACTGCAGCCATAGCATTAACCGTATACAACCTCATCATCATGAAACGAAACAGGGGACGCAATATGCAATCACAGCATGAAAGGTCAAGTGGATTGGTTGAAGTGGTCATGGAAAGTAGCATTGAGAACACCCAAAGGAGGTTGCTTTCAAGCTTCAAGTACAAAAAAGAAGGAGGGGATGATTATGAATGCCCAGTTTGTTTATCAGGTTTTGAAGAAGGGGAAGAGGTGAGGAAGCTACCACGGTGTAAGCACTCGTTTCATGCTCAATGCATAGACATGTGGCTCTACTCTCACTTCGATTGCCCAATTTGTCGAACACCTGTTGGGCCATTCTGTACTCACCGTATACCGCCGGAGAATTCTCGTCCCCGATTGCCGGAATCCGGTGGTGTCTCATCAGTTTGA 513 0.4639 MGDFQSSYTVSPPPAPSSSDKASLAILYYGLVVVGTAAIALTVYNLIIMKRNRGRNMQSQHERSSGLVEVVMESSIENTQRRLLSSFKYKKEGGDDYECPVCLSGFEEGEEVRKLPRCKHSFHAQCIDMWLYSHFDCPICRTPVGPFCTHRIPPENSRPRLPESGGVSSV. 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00653 170 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 9 147 - -
Seca12g00653 170 CDD RING-H2_EL5-like 98 141 - -
Seca12g00653 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 146 IPR013083 -
Seca12g00653 170 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Seca12g00653 170 SUPERFAMILY RING/U-box 89 147 - -
Seca12g00653 170 MobiDBLite consensus disorder prediction 151 170 - -
Seca12g00653 170 Pfam Ring finger domain 98 141 IPR001841 -
Seca12g00653 170 SMART ring_2 99 140 IPR001841 -
Seca12g00653 170 FunFam RING-H2 finger protein ATL1 63 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00653 Seca-Chr12 5882355 5882867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00653 9 146 C3H Transcription Factor Family AT2G17450 32.867 1.17e-20 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00653 - - gmx:102668213 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00653 12 5882355 5882867 Seca12g00653 12 5882355 5882867 ECH