Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00651 ATGTCATTTCGAAAGCCCTGGCGGGTAAGATTCGATCTCTGTTTTGTCCTCCGCTCCCTCCAAAATCTCTCTCGCTTTCCGTTTCAGAATCGGAGTATGTCGGTGAATCTAACGCCGAATGCGATCCCGGCGATAGTAGCCGGCGACATGAACTCAAAACCATTGGTGCAGGTTTTGGATATCAAGTTGATTTCGAATAACAAACAGCAGGAGAGGTACCGCATTTTGCTCTCAGATGCTGTTTCCTCTCAGCACGCCATGCTCGCCACTCAACTCAACGATCGAATCCGAACCGGACGAGTTAAGAAAGGTTCCGTCGTTCAGCTGATCGAGTACATTTGCAGTCCTATTCAGAACCGCAAGATTATTGTGGTTCTCAACATGGAAACTATAATACCAGATTGTGAGATCATTGGAAATCCAAAGTCATTTGTGGAATCTGATTTACCAACTCAGGAAGTTTTACCTAATAACAACATGCAGAATTCATCTGGGAGTAATAATTATCATCAGCCAGCTCAAAATGCAAGTTGTAATGTGCAGAATTTAAGGCCAACTGTTCAACCTCCATACCAGCCGCCACCTGTTTACAAAAGCCATGGTGCAATAGTGAAAAATGAAGCCTCGACACGTATTATTCCAATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCCATCAAGGCAAGGGTGACTGCAAAAGGGGATCTACGCCGCTATAATAATGCCAGGGGAGATGGGAAGGTCTTCTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACCTGCTTTAATACAGTTGTTGATCGCTTCTATGATGCAATCGAGGTTGGTAGAGTTTACATGTTATCCAAAGGTAGCTTGAAACCTGCGCAGAAGAACTTCAACCATTTAAAGAATGAATGGGAAATTCTTTTGGATTTGACATCAACTGTTGAACTTTGCCCGGAGGAAGATGGTACTATACCTAGACAGCAATTCTCCTTTCGGCCCATCATTGATATTGAGAATGTTGACAGCAACTGCATACTTGATGTTATTGGGGTTGTGACATGTGTGAATCCATCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGAAGAATTTTGAACCTAAAGGACTGTTCTGGTAGGAGTGTTGAACTAACCCTTTGGGGTGAATTTTGCGACAGGGAAGGGCAAAAGTTGCAAGAGATGGTCGATGCTAGGTTTTTCCCCATTCTGGCAGTCAAAGCTGGGAAGGTCAATGACTTTAGTGGGAAATCTATAGGGACTATTTCTGCTACACAGCTTTTCATAAATCCAGATTTCTCTGAGGCATGTAGCTTAAGGGACTGGTTTGATAGAGTGGGAAAAGATTCTGCTTCTCTGTCCATTACTAAGGACATTATACCTGGAGGACCTAAGAATGACGTACGTAAAACTGTTTCTCAGATCAAGGATGAAGGTCTGGGGCGGTCAGATAAGCCAGATTGGATAACGGTGAGGGCAACGATATCTTTCATCAAGACAGATACATTTTGTTACACAGCTTGTCCTCTGATGGTTGGAGATCGACAGTGTAATAAAAAAGTGACTAAGTCAGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAATGTGATTACCGATATCTTCTTCAAGCTCAAATTCTGGATCATACGGGAATAACTTGGGTAACTGCTTTCCAGGAATCAGGGGAAGAGATTTTGGGTTACTCAGCAAAGGAGTTGTACCTGTTGAAGTATGAACAGCAAGATGATGAGAAGTTTGCAGGAATAATCAAGAGTAGTCTCTTCAACCAATTTGTCTTCAGGCTAAAAATTAAAGAGGAATTATATGGTGATGAACAGAGGGTGAAGATTACAGTAGTTAAGGCAGGCAAGGTGAATTATTCTTCAGAGAATGGAAACATGCTGGATTTGATTTCAAAGTTTTATAGGTAA 1974 0.4225 MSFRKPWRVRFDLCFVLRSLQNLSRFPFQNRSMSVNLTPNAIPAIVAGDMNSKPLVQVLDIKLISNNKQQERYRILLSDAVSSQHAMLATQLNDRIRTGRVKKGSVVQLIEYICSPIQNRKIIVVLNMETIIPDCEIIGNPKSFVESDLPTQEVLPNNNMQNSSGSNNYHQPAQNASCNVQNLRPTVQPPYQPPPVYKSHGAIVKNEASTRIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNTVVDRFYDAIEVGRVYMLSKGSLKPAQKNFNHLKNEWEILLDLTSTVELCPEEDGTIPRQQFSFRPIIDIENVDSNCILDVIGVVTCVNPSVPILRKNGMETQRRILNLKDCSGRSVELTLWGEFCDREGQKLQEMVDARFFPILAVKAGKVNDFSGKSIGTISATQLFINPDFSEACSLRDWFDRVGKDSASLSITKDIIPGGPKNDVRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMVGDRQCNKKVTKSGNTRWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQESGEEILGYSAKELYLLKYEQQDDEKFAGIIKSSLFNQFVFRLKIKEELYGDEQRVKITVVKAGKVNYSSENGNMLDLISKFYR. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00651 657 Gene3D - 468 656 IPR012340 -
Seca12g00651 657 FunFam Replication protein A subunit 211 321 - -
Seca12g00651 657 Pfam Replication factor-A protein 1, N-terminal domain 37 131 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca12g00651 657 Pfam Replication factor-A C terminal domain 497 646 IPR013955 -
Seca12g00651 657 Pfam OB-fold nucleic acid binding domain 226 301 IPR004365 GO:0003676
Seca12g00651 657 CDD RPA1_DBD_C 481 654 IPR047192 -
Seca12g00651 657 SUPERFAMILY Nucleic acid-binding proteins 33 140 IPR012340 -
Seca12g00651 657 Pfam Replication protein A OB domain 335 439 IPR031657 -
Seca12g00651 657 SUPERFAMILY Nucleic acid-binding proteins 329 456 IPR012340 -
Seca12g00651 657 FunFam Replication protein A subunit 36 145 - -
Seca12g00651 657 Gene3D - 35 145 IPR012340 -
Seca12g00651 657 PANTHER REPLICATION FACTOR A 1, RFA1 225 631 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca12g00651 657 FunFam Replication protein A subunit 464 655 - -
Seca12g00651 657 NCBIfam replication factor-a protein 1 (rpa1) 36 654 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca12g00651 657 CDD RPA1_DBD_B 346 453 - -
Seca12g00651 657 CDD RPA1N 41 132 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca12g00651 657 FunFam Replication protein A subunit 324 463 - -
Seca12g00651 657 CDD RPA1_DBD_A 214 317 - -
Seca12g00651 657 Gene3D - 211 320 IPR012340 -
Seca12g00651 657 SUPERFAMILY Nucleic acid-binding proteins 212 323 IPR012340 -
Seca12g00651 657 Gene3D - 324 463 IPR012340 -
Seca12g00651 657 SUPERFAMILY Nucleic acid-binding proteins 478 655 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00651 Seca-Chr12 5876813 5880019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00651 58 652 Core DNA Replication Machinery Family AT2G06510 68.842 0.0 876
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00651 K07466 - zju:107409151 1008.82