Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00646 ATGGGTAGAAGCCCTTGTTGTTCAAAGGAGGGCTTGAATAGAGGTGCTTGGACTGCTCATGAAGACAAAATCCTCACTGATTACATTAGGCTCCATGGCGAAGGAAAATGGAGAAACCTTCCCAAAAGAGCAGGATTGGCTGGCCATGTAGGTTTGAAAAGATGTGGCAAAAGTTGCAGACTTCGATGGTTGAATTATCTCAGACCAGATATTAAGAGAGGCAATATATCCTCTGATGAAGAAGAGCTTATCATCAGGCTTCACAATCTACTGGGAAACAGATGGTCTCTGATAGCAGGAAGGCTTCCAGGGCGAACAGACAATGAAATAAAGAATTACTGGAACACCAATTTAGGAAAAAAAATTAAAGATAGCCACCAAACCACTAACACTACTTGTTCTCGTAGGCCCTGTGTTCAAACCAATGGAAAGAGCACACAGAAAAATCCAAAGTCTCAATTAATTAGCACTTTCTTGCTGTCTCCTCCTAAGGTAGACTCTCATGTGGTCCGTACAAAGGCTACCAAGTGCTCTAAGGCAGTATTCATAAACTCACAGCTCCCTCACTCATCATCATCAACACAATTGCATAACAACTCTGAGGCAGAAGCAAAGCCTTTGAATATTGTGGATAATGCTGTGGCCAGTAATTCAATGAGTAACCAAGTGGAACCTGTTGGTGATAATGGGTTTTTGTCACTTCCAAGTAGTGAAGAAAAAGAACTCTCCACAGATTTGCTCATTGATTTTAATGTGGGGGATATTTGTTTATCTGATCTTCTGAATTCAGATTTCTCAAACATGTGCAATTTCAGTTACAGTAACGATCATAACAACCCCGAGCTGTTATCACCTGCTTGTTCAGACCAGCCTCTTATGTTGTCTGATGAAATTTTCAATGACTGGACACAGAGCAATCTTGCTGATGAAACAAATGTGTCCAACAACCTATATTCCTTCAATTCGTTCCTTGAGTCAAGTGAGGAGGATGAAATGCTTGCAGAATAA 1008 0.4087 MGRSPCCSKEGLNRGAWTAHEDKILTDYIRLHGEGKWRNLPKRAGLAGHVGLKRCGKSCRLRWLNYLRPDIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKIKDSHQTTNTTCSRRPCVQTNGKSTQKNPKSQLISTFLLSPPKVDSHVVRTKATKCSKAVFINSQLPHSSSSTQLHNNSEAEAKPLNIVDNAVASNSMSNQVEPVGDNGFLSLPSSEEKELSTDLLIDFNVGDICLSDLLNSDFSNMCNFSYSNDHNNPELLSPACSDQPLMLSDEIFNDWTQSNLADETNVSNNLYSFNSFLESSEEDEMLAE. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00646 335 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Seca12g00646 335 Pfam Myb-like DNA-binding domain 14 67 IPR001005 -
Seca12g00646 335 Gene3D - 14 72 - -
Seca12g00646 335 CDD SANT 77 118 IPR001005 -
Seca12g00646 335 FunFam Transcription factor TT2 76 149 - -
Seca12g00646 335 FunFam MYB-related transcription factor 13 72 - -
Seca12g00646 335 SUPERFAMILY Homeodomain-like 12 114 IPR009057 -
Seca12g00646 335 CDD SANT 16 67 IPR001005 -
Seca12g00646 335 SMART sant 72 120 IPR001005 -
Seca12g00646 335 SMART sant 13 69 IPR001005 -
Seca12g00646 335 MobiDBLite consensus disorder prediction 124 150 - -
Seca12g00646 335 Gene3D - 76 149 - -
Seca12g00646 335 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca12g00646 335 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 216 - -
Seca12g00646 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Seca12g00646 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 67 IPR017930 -
Seca12g00646 335 ProSiteProfiles Myb-like domain profile. 9 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00646 Seca-Chr12 5820055 5821753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00646 1 164 MYB Transcription Factor Family AT5G49330 52.128 2.73e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g00646 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00646 K09422 - gmx:100802704 412.535