Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00615 ATGAAATTCTCGTGGAAATCGATTTTTCCTAGTTGTTACAAGGGTGATCAGTACTCCTCACCCATGCCCACCAAAGTGGTAGCTACAAAGGCTAGTTCTTTTAACAGGATCTCTGTCACTGATTTGAGTTTTCCAAGTGCTACCACTCTTTCAGAGGATCTCTCCGTTTCTCTAGCAGGATCTAACCTGCATGTTTTCACACTAGCTGAGCTCAAGATTATCACACAGACCTTTTCTTCAAGTAACTTTCTTGGTGAAGGAGGGTTTGGACCTGTGCATAAGGGGTTCATTGATGACAAGCTTAGACCTGGTCTTGAGGCTCAGCCAGTGGCTGTTAAACTCTTGGATTTGGATGGCACTCAGGGTCATAAAGAGTGGCTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCACACCTTGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTTTGGTATATGAATATCTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATACTCAGCATCATTACCATGGTCTACAAGAATGAAAATTGCAGTTGGAGCTGCAAAGGGTCTAGCTTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATTTTGTTAGACTCTGTAACTAATGTTCCATTTGAATCCCTTTCATCTATTATTTTAACTCACTCTTGTTATTCATTCTTTTTCTTTCAGGATTATAATGCAAAGCTCTCTGATTTTGGCTTGGCTAAAGATGGTCCTGAAGGAGATGACACACATGTTTCAACTAGAGTTATGGGCACACAAGGTTATGCAGCCCCTGAATATATCATGACAGGACATTTGACAGCAATGAGTGATGTGTATAGTTTTGGAGTTGTCCTCTTGGAGCTATTAACAGGGAGAAGGTCAGTGGACAAAGGAAGACCAGCAAGGGAACAGAACCTAGTGGAATGGGCCAGACCAGTCTTAAATGATTCAAGAAAACTTAGCAGAATAATGGATCCAAGGCTTGAGGGACAATATTCTGAGATGGGGGCAAAAAAAGCAGCTGCATTGGCTTATCAATGCCTCAGCCATAGGCCAAGGAATAGGCCTTCAATGACCACAGTGGTTAAGATTCTTGAGCCTCTTCAAGAGTTTGATGATATTCCAATTGGACCTTTTGTTTACACTGTTCCAACTGATCATAATGAAGTGATTAGTGAAACACCTAAGGAGAGAAAGAGGGAAAATGGTCATCATCACAGGAATCCTAAGCATAATAATGATAATGATCAAGTGCATAATAGAGATAGAGATGCAAAAGAGGATGACACACCAAGGGAAAGGAAAAGGGAAAATGGTCACCATCACCGAAATCACCATCGCCATAATGGACATAGGCATCATCCACTTAAATCGCCAAAGTCAGAGTCACAAAATGATCATGAACACCAAAAGAGTAGAAGAAGAAGTGGGTCACATTCACCTGACACATCCATTGCATCACAAGGCCAAGGAAGCATATAG 1527 0.4132 MKFSWKSIFPSCYKGDQYSSPMPTKVVATKASSFNRISVTDLSFPSATTLSEDLSVSLAGSNLHVFTLAELKIITQTFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGTQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYSASLPWSTRMKIAVGAAKGLAFLHEAKKPVIYRDFKASNILLDSVTNVPFESLSSIILTHSCYSFFFFQDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPAREQNLVEWARPVLNDSRKLSRIMDPRLEGQYSEMGAKKAAALAYQCLSHRPRNRPSMTTVVKILEPLQEFDDIPIGPFVYTVPTDHNEVISETPKERKRENGHHHRNPKHNNDNDQVHNRDRDAKEDDTPRERKRENGHHHRNHHRHNGHRHHPLKSPKSESQNDHEHQKSRRRSGSHSPDTSIASQGQGSI. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00615 508 PANTHER OS01G0588500 PROTEIN-RELATED 57 384 - -
Seca12g00615 508 Pfam Protein tyrosine and serine/threonine kinase 82 380 IPR001245 GO:0004672|GO:0006468
Seca12g00615 508 MobiDBLite consensus disorder prediction 494 508 - -
Seca12g00615 508 Gene3D Transferase(Phosphotransferase) domain 1 161 389 - -
Seca12g00615 508 ProSiteProfiles Protein kinase domain profile. 78 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00615 508 MobiDBLite consensus disorder prediction 471 493 - -
Seca12g00615 508 CDD STKc_IRAK 84 383 - -
Seca12g00615 508 Gene3D Phosphorylase Kinase; domain 1 41 160 - -
Seca12g00615 508 MobiDBLite consensus disorder prediction 407 508 - -
Seca12g00615 508 MobiDBLite consensus disorder prediction 452 470 - -
Seca12g00615 508 MobiDBLite consensus disorder prediction 422 451 - -
Seca12g00615 508 SUPERFAMILY Protein kinase-like (PK-like) 54 381 IPR011009 -
Seca12g00615 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca12g00615 508 FunFam Serine/threonine-protein kinase BIK1 45 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00615 Seca-Chr12 5572332 5574827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00615 64 380 Glycoside Hydrolase AT3G07070 49.375 2.23e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca12g00615 PK_Tyr_Ser-Thr 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00615 - - gmx:100799411 734.176