Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00603 ATGGCCGCTGTTCGTTCTCATTTCTTCTTCTTCTTCCTCCCCCTCTTCTTCTTCTTCTTCTCATTCCCCTCTCCCTCCTTCTCCATTTCAGAAAACGAAGCCCTCCTCAAACTCAAACAATCCTTCACCAACACCCAATCCCTCTCTTCCTGGGTTCCCAATCAGAACCCTTGCACTTCCAAGTGGGTTGGCGTCATCTGTTTCAACAACATCATCTCCAGCCTTCACCTCACCGATTTGGGTCTCTCTGGCTCCATCGACATCGATTCCCTCATTCAGATTCCCTCAATCCGAACCATCAGCTTCGTCAACAACTCCTTCTCTGGCCCCATGCCTCCATTCAACAAACTCGGTGCTCTCAAAGCTATCTACCTATCAGAGAACCAATTCTCTGGCCCTATTCCCCCAGATTTCTTCGCCCATTTAGCTTCCCTCAAGAAGGTATGGCTCTCCAACAACAAATTCTCTGGAAACATACCAGACTCCATTACCACCCTTCGTTTCCTCACCGAATTGCATCTCGAGAACAACGAGTTCTCAGGGCCTGTCCCTGAACTCAAACAGGATCTTAAATCCTTCGACATGTCTAACAACAAATTACAAGGTTCAATACCCTCTAGCATGTCAAGGTTCAGTGCCAATTCCTTTGCCGGTAACGAAGCTCTCTGTGGGAAGCCTCTGGAGAAAGAGTGTGATCCATCAGAGGGACAAGGTTCTGGTATGGTCACGAAGGTCATCACCATTCTTGTTATTGTGGCAGTGTTGGTGGTGGTTTTCACGTTCCTTAAGTCAAAGCGTAACCGTGATGATGATTTCAGCGTCATGAGTAGGGGCGCATCAGAGGAGGTGGTGCAGGTGCACGTGCCAAGCTCGAAGCATAGCAGAACATCGGAGGGTAGTAGTAGGAAGGAATCAAAGAAAGGGTCTTCTAGGAGTGGTGGGATGGGTGACCTTGTGATGGTGAATGATGAAAAGGGTGTGTTTGGGTTGCCAGATTTGATGAAGGCTGCTGCTGAGGTTTTGGGAAATGGTGGGTTAGGTTCTGCCTATAAGGCTGCCATGGCTAATGGATTGTCTGTGGTGGTGAAGAGGATGCGAGAGATGAATAAAGTAAGCAGAGACATATTTGATGCTGAGATGAGAAGATTTGGAAGGCTAAGAAACCGTAACATTATGACACCTTTGGCTTACCATTACCGCAGGGAGGAAAAGCTGTTTATCACAGAATACATGCCCAAAGGAAGCTTGTTATATGTCTTGCATGGTGACAGAGGAACAAGCCATGCTGAGCTGAATTGGCCTACTCGTTTGAAGATTGTGAAGGGAATTGCACGAGGGTTGGGCTTTCTATATACTGAATTTGCTTCAGAAGAGTTGCCTCATGGAAACCTGAAATCCAGCAATGTTTTACTAGCTGATAATCATGAGGCTCTCTTGAGTGACTTTGCCTTTCATTCACTCATCAACCCCAGCTATGCTATACAGACATTGTTTGCCTACAAAACTCCTGATTACACGCTGTACCAACAGGTTTCACAGAAGAGTGATGTTTATTGCCTTGGAATTATCATTCTTGAGATTATTACTGGGAAATTCCCTTCTCAATATCACAGTAATGGGAAAGGTGGGACAGATGTGGTGCAATGGGTCTTCACAGCAATTTCTGAAAGAAGAGAAGCAGAATTGATTGATCCAGAGTTATCAAGTGAGACAAATTCAATCAATAACATGCTGCAACTTCTCCAAATTGGGGCTGCTTGCACAGAGAGCAACCCCGAACAGAGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTACAGGTTTAA 1833 0.4583 MAAVRSHFFFFFLPLFFFFFSFPSPSFSISENEALLKLKQSFTNTQSLSSWVPNQNPCTSKWVGVICFNNIISSLHLTDLGLSGSIDIDSLIQIPSIRTISFVNNSFSGPMPPFNKLGALKAIYLSENQFSGPIPPDFFAHLASLKKVWLSNNKFSGNIPDSITTLRFLTELHLENNEFSGPVPELKQDLKSFDMSNNKLQGSIPSSMSRFSANSFAGNEALCGKPLEKECDPSEGQGSGMVTKVITILVIVAVLVVVFTFLKSKRNRDDDFSVMSRGASEEVVQVHVPSSKHSRTSEGSSRKESKKGSSRSGGMGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNRNIMTPLAYHYRREEKLFITEYMPKGSLLYVLHGDRGTSHAELNWPTRLKIVKGIARGLGFLYTEFASEELPHGNLKSSNVLLADNHEALLSDFAFHSLINPSYAIQTLFAYKTPDYTLYQQVSQKSDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPELSSETNSINNMLQLLQIGAACTESNPEQRLNMKEAIRRIEEVQV. 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00603 610 Pfam Leucine rich repeat 120 178 IPR001611 GO:0005515
Seca12g00603 610 SUPERFAMILY L domain-like 28 211 - -
Seca12g00603 610 Gene3D Ribonuclease Inhibitor 30 138 IPR032675 -
Seca12g00603 610 SUPERFAMILY Protein kinase-like (PK-like) 339 605 IPR011009 -
Seca12g00603 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 609 IPR046959 -
Seca12g00603 610 MobiDBLite consensus disorder prediction 283 316 - -
Seca12g00603 610 MobiDBLite consensus disorder prediction 296 310 - -
Seca12g00603 610 Gene3D Phosphorylase Kinase; domain 1 341 411 - -
Seca12g00603 610 Gene3D Transferase(Phosphotransferase) domain 1 412 610 - -
Seca12g00603 610 Pfam Protein kinase domain 339 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00603 610 ProSiteProfiles Protein kinase domain profile. 335 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00603 610 FunFam Nuclear pore complex protein NUP107 28 185 - -
Seca12g00603 610 Gene3D Ribonuclease Inhibitor 139 233 IPR032675 -
Seca12g00603 610 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00603 Seca-Chr12 5443929 5447002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00603 11 610 Receptor kinase-like Gene Family AT3G42880 52.449 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g00603 Pkinase 3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00603 - - gmx:100816925 920.228