Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00597 ATGGACTTTCGTGCTTTCTCTCTAAGATTTTCTGAATCTGTATATTTCACAGGGTCTCCCGAGACATCTTGTCACTCTACAACAACCATGGAGTTGTTCCCTACCAAGGTGACACCACAAAACCTCACAACCATGGATTTGCTCTCTCCACCCGCCGTTTATCCTCTACACACTGAGGTTCCAACTTTGGTTAACTCAAGTGCATTTAAGTCTGTGGGCAAGGAGCCTAAAGCTTCACAGTTGACAATCTTTTATGGTGGGCAAGTTGTTGTATTTGATGATTTTCCTGCTGACAAAGTGGAGGAGATAATGTCATTGGCCAGAAAAGGAACCTCCCATAGCCATAACTCCTCTGCATATGCTTACACTCAGAATCAGCCTTCAATGATGATTCCTAATATCAACTCTCAAGCTCCTTCCAGACCAATTGCTAGTGGCTTACCAATTGCTAGGAAAGCTTCACTTCATCGGTTCCTGGAGAAGAGGAAAGATAGAATTGCTGCCAAAGCACCATATCAAACAAACAATCCCGTCTCTGCCCCTAACAAGCCGACTGAATCCATTTCATGGCTCGGGCTAGGTGCAAAATGA 591 0.4433 MDFRAFSLRFSESVYFTGSPETSCHSTTTMELFPTKVTPQNLTTMDLLSPPAVYPLHTEVPTLVNSSAFKSVGKEPKASQLTIFYGGQVVVFDDFPADKVEEIMSLARKGTSHSHNSSAYAYTQNQPSMMIPNINSQAPSRPIASGLPIARKASLHRFLEKRKDRIAAKAPYQTNNPVSAPNKPTESISWLGLGAK. 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00597 196 ProSiteProfiles Tify domain profile. 74 109 IPR010399 -
Seca12g00597 196 MobiDBLite consensus disorder prediction 172 186 - -
Seca12g00597 196 MobiDBLite consensus disorder prediction 166 196 - -
Seca12g00597 196 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 184 IPR040390 -
Seca12g00597 196 Pfam Jas motif 148 173 IPR018467 -
Seca12g00597 196 SMART tify_2 74 109 IPR010399 -
Seca12g00597 196 Pfam tify domain 75 107 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00597 Seca-Chr12 5417267 5419998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00597 3 196 Tify Gene Family AT1G19180 37.900 9.63e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca12g00597 tify 4.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00597 K13464 - gmx:100802800 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00597 12 5417267 5419998 Seca12g00597 12 5417267 5419998 ECH