Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00594 ATGCAGCCACAGAGGTTAAGGCAGCATGCCATGATGCAACACTCTCTCTACCACCACCCTGCTCTCCTTACTACCCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCCCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTCGGCAACATTCATCCTCAGGTTACAGAAGTACTTCTTCAAGAGCTTTTTTCAAATGCAGGCCTCCTTGAAGGATGCAAGCTTATTCAAAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCACAATTCAGCTGCACTTGCTATTGTGACCCTCAATGGAAGGAATATTTTTGGACAGCCTATTAAAGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACATCAGGCCACTTTAATATTTTTGTTGGTGACCTTAGTCCTGAGGTTACAGATGCAACTTTATATGCTTGCTTCTCTGCATATCCTAGTTGTTCAGATGCACGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGTTTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCCATAAATAATTTAACTGGGAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCCACGAAAGGGGCTAATGCCAATGATGAAAAGCAGGGTTCAGATTCAAAAAGTGTTGTGGAGTTAACTAATGGAACATCTGAGGAAGGCCAGGAAGTAATCAATGATGATGCCCCAGAGAAGAATCCACAATATACCACTGTTTACGTTGGCAATCTTGCTCCAGAGGCAAGGATTAGTATTATTTTCCCACTGTCTCTTTACCTTACAAGTCTTTCATATCTATCTGGATGTACCTTATCTGGCTATTTTTAA 873 0.4307 MQPQRLRQHAMMQHSLYHHPALLTTPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVTEVLLQELFSNAGLLEGCKLIQKEKSSYGFVDYFDHNSAALAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSAYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINNLTGKWLGSRQIRCNWATKGANANDEKQGSDSKSVVELTNGTSEEGQEVINDDAPEKNPQYTTVYVGNLAPEARISIIFPLSLYLTSLSYLSGCTLSGYF. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00594 290 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Seca12g00594 290 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 263 - -
Seca12g00594 290 SUPERFAMILY RNA-binding domain, RBD 124 219 IPR035979 GO:0003676
Seca12g00594 290 CDD RRM2_PUB1 130 209 - -
Seca12g00594 290 FunFam oligouridylate-binding protein 1-like isoform X2 129 224 - -
Seca12g00594 290 SMART rrm1_1 47 116 IPR000504 GO:0003723
Seca12g00594 290 SMART rrm1_1 132 205 IPR000504 GO:0003723
Seca12g00594 290 MobiDBLite consensus disorder prediction 211 237 - -
Seca12g00594 290 Gene3D - 39 125 IPR012677 -
Seca12g00594 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Seca12g00594 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Seca12g00594 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Seca12g00594 290 Gene3D - 126 226 IPR012677 -
Seca12g00594 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Seca12g00594 290 MobiDBLite consensus disorder prediction 211 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00594 Seca-Chr12 5397630 5401176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00594 47 269 Eukaryotic Initiation Factors Gene Family AT3G16380 29.870 3.03e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00594 K13201 - gmx:100803322 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00594 12 5397630 5401176 Seca12g00594 12 5397630 5401176 ECH