Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00588 ATGGTGAAGCCTGGTTCGGAAAAAGCAGAGGAGAAAAATGAGAAAAACGATTACACATACAGAGGTGTTCGAAAGAGGAAGTGGGGCAAATGGGTGTCCGAAATCAGACTACCAAACAGTCGCCAGAGAATTTGGTTGGGATCCTATGACACCCCGGAGAGGGCGGCGCGTGCTTTCGATGCTGCCATGTTCTGCTTACGTGGCCGCAACGGTAGGTTTAATTTCCCCGATAACCCACCGGATATCGCCGGTGGCAGGTCCATGACGCCCTCTCAAATTCAGGCAGCAGCCGCCCGTTTTGCCAACTCGGGGCCCCAAGAGGGTCCATCGGGTCGACCCGAAACGACTGAATCGGCCATGGAATGTTCGTCAGAGGGGACAATGCTGCAAACAGAGTCTCCGTCGCCTTCTGTTTCGGAGGGGACTGTCCAAACTGATAGCGACGTGAACCTGAACGGCTCGTTTCCGGATTTGTTCACGCCGATCGGGTCGAGTGATTATGTATCGGATTATGGGATTTTCCCGGGGTTTGATGATTTTTACGTGCCGGAAATGCCTAGTAATGTTAATTATGGAGAAGAGAACACGGATGGGTTCATTGTTGATGACACTTTCTTGTGGAATTTCTGA 630 0.5143 MVKPGSEKAEEKNEKNDYTYRGVRKRKWGKWVSEIRLPNSRQRIWLGSYDTPERAARAFDAAMFCLRGRNGRFNFPDNPPDIAGGRSMTPSQIQAAAARFANSGPQEGPSGRPETTESAMECSSEGTMLQTESPSPSVSEGTVQTDSDVNLNGSFPDLFTPIGSSDYVSDYGIFPGFDDFYVPEMPSNVNYGEENTDGFIVDDTFLWNF. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00588 209 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Seca12g00588 209 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Seca12g00588 209 MobiDBLite consensus disorder prediction 100 145 - -
Seca12g00588 209 FunFam Ethylene-responsive transcription factor 2 19 77 - -
Seca12g00588 209 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Seca12g00588 209 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Seca12g00588 209 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Seca12g00588 209 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Seca12g00588 209 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Seca12g00588 209 Pfam AP2 domain 20 68 IPR001471 GO:0003700|GO:0006355
Seca12g00588 209 MobiDBLite consensus disorder prediction 108 145 - -
Seca12g00588 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00588 Seca-Chr12 5344059 5344688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00588 20 209 AP2-EREBP Transcription Factor Family AT1G19210 45.960 1.52e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g00588 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00588 - - gmx:732656 311.612