Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00587 ATGGCGACCTCTCAGCTCACTGCATCCTCAATTACTACAAGGAAGAATTTGCCATCCCTTGAAGGGTTTCGACCTTCAGCGCTTCAATTTCCTTCTGTCAGAATTGGCACTCTCACACAAAGGTCGTTCCCGTCTCTGGTTGTTAAAGCTGCCACTGTTGTCGCCCCCAAGCACACCACTGTTAAACCACTGGGTGATAGAGTATTGGTAAAAATTAAGGATGCTGAAGAGAAGACTGAGGGTGGGATTTTACTGCCAGCAACTGCTCAAACAAAGCCTCAAGGGGGTGAGGTGGTTGCCGTTGGAGAAGGGAAGTCACTTGGGAAGACCAAAGTGGACATTAGTGTGAAGACAGGTGCACAAGTTGTGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCAAAACATCTTATACTGAAGGACGATGATATCATTGGGATCCTTGAAACCGATGAGGTCAAGGATCTTAAACCCTTGAATGATAGAGTCTTGATAAAGGTTGCAGAAGCTGAGGAAAAAACTGCTGGGGGTTTGTTGCTCACTGAGGCAACCAAAGAGAAACCGTCTATTGGAACAGTGATAGCTGTTGGTCCAGGGCCTCTGGATGAGGAAGGCAACAGAAAACCATTGTCCATTGCACCTGGAAATACAGTTCTTTACTCCAAATATGCGGGGAATGACTTCAAGGGCAAAGATGGCTCTAACTACATTGCTCTGAGGGCCTCAGATGTCATGGCCATCCTAACTTAG 759 0.4651 MATSQLTASSITTRKNLPSLEGFRPSALQFPSVRIGTLTQRSFPSLVVKAATVVAPKHTTVKPLGDRVLVKIKDAEEKTEGGILLPATAQTKPQGGEVVAVGEGKSLGKTKVDISVKTGAQVVYSKYAGTEVEFNGSKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVLYSKYAGNDFKGKDGSNYIALRASDVMAILT. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00587 252 PRINTS 10kDa chaperonin signature 117 129 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 PRINTS 10kDa chaperonin signature 138 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 PRINTS 10kDa chaperonin signature 83 104 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 PRINTS 10kDa chaperonin signature 61 76 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 PIRSF Cpn21 1 252 IPR017416 GO:0006457|GO:0046914|GO:1901671
Seca12g00587 252 FunFam 20 kDa chaperonin, chloroplastic 54 153 - -
Seca12g00587 252 Hamap Co-chaperonin GroES [groES]. 60 152 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 PANTHER 10 KDA HEAT SHOCK PROTEIN 156 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 SMART Cpn10_2 158 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 SMART Cpn10_2 60 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 Hamap Co-chaperonin GroES [groES]. 158 252 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 SUPERFAMILY GroES-like 158 251 IPR011032 -
Seca12g00587 252 CDD cpn10 60 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 FunFam 10 kDa chaperonin 156 252 - -
Seca12g00587 252 Gene3D GroES chaperonin 154 252 IPR037124 GO:0006457
Seca12g00587 252 Gene3D GroES chaperonin 54 153 IPR037124 GO:0006457
Seca12g00587 252 ProSitePatterns Chaperonins cpn10 signature. 159 183 IPR018369 GO:0005524|GO:0006457
Seca12g00587 252 SUPERFAMILY GroES-like 59 152 IPR011032 -
Seca12g00587 252 ProSitePatterns Chaperonins cpn10 signature. 61 85 IPR018369 GO:0005524|GO:0006457
Seca12g00587 252 Pfam Chaperonin 10 Kd subunit 61 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 Pfam Chaperonin 10 Kd subunit 159 250 IPR020818 GO:0005524|GO:0006457|GO:0044183
Seca12g00587 252 CDD cpn10 159 251 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00587 Seca-Chr12 5333561 5336454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00587 1 252 Calmodulin-binding Proteins AT5G20720 75.889 4.94e-138 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00587 K04078 - gmx:100804915 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00587 12 5333561 5336454 Seca12g00587 12 5333561 5336454 ECH