Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00586 ATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAGCCGACAGCCTACTGAATTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCTGCTCAAGAGCTTGTTGCCAAAGATTTGCATGACACTACGTGGTCATTTAGACATATTTATCGGGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTATTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTTTAAGGCGAGCTAATAGACAGCAGCCAGCACTTTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCTAAATATAACAAAGCCATGTACACTCAAGTCTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACAGAGGAGTCAGGAGTACGCAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTCAGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGTAGAGTTTCTATTTGGGAAATTGAACCAGTAGTGACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGACAACCAGGAATGCCAGATGATGAATCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGGGATGACTTTGGCATGAAGGATGCCTCAAGTTCTATCTTCCCTGGTTTGAGTTTAATGCAGTGGATGAGCATGCAGCAGAACAATCAGTTCTCTGCTGCTCAATCAGGATGTTTCCCATCCATGCTTCCATCTAATACTCTGCATGGTAACCTCAGCACTGATGACCCATCCAAGTTATTGAGTTTTCAAGCTCCTGTCCTCTCTGCACCAGGTCTTCAGTTTAACAAACCAAATTTACCAAGTCAAATCAACCAACTGCAACAGTCCCCAATGTCATGGCCTCAGCAGCAGCTGCAGCAACAACAGCAACAGCAGCAATTACAGTCATTGTTGCAAATACCAATAAATCAGCTCCAGCAGCAGAGGCAACAGCAGCTTCCTGAACCACAAAACCTGCCATTACTGCAACAACAATTGCCCCAGCAGCTAGGACAGCAGCCACAGAAACAGCAACAGTCATGTCAACAAGCTATTATGAATAATGGTGTAGTTGCTTCTAATCAGAATACAAATCAGTTTGTACAGCAACCAGTATCCTTCACTCAGCTTCAGCAACAACAATTACTCTCGGGAGGTATCCCACCCCAGCAAAACATCCAGTCAGCTAGTAAGAATACATTCCCACTGACATCCCTTCCACAAGAATCTCAATTTCAGCAACAGATAGACCAGCAAGCCAATCTCTTACAGAGGCAGCCGCAACAGACACAGTTGCAACAATCTCCACTACAGTTGTTGCAACAAAGCCTGCCACAGAGGTCACCACAACAGCCACCAGTGACACAAATGTCCCAGCAAAACCCCTCGGAGCAACAATTACACCTACAATTTCTACAGAAATTGCAGCAGCAACAACAGCAGCAGCAGCAGCAACTTCTTTCCACATCTAGCCCACTTTTGCAATCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAACAATTACCACAGCTGCCTATATCTCAGCATCAGACTCAGCAGCTTGGCAATAATGCATTCTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCTTCATCTCTTATGCAATCACAGCAGCTTCCTATGAACCAAGCCCAGAGTACACAGAAATCACTTGCAACTACTAGAGCTCCCTCTACACTTACAGATGCAGATGCCCCATCTTGCTCAACCTCACCATCTACTAATAACTGCCAGATATCTCCATCAAATCTCCTCAAAAGAAATCAACAAGTACCAGCTACATTAGGGGGGAGTTTGGTAGTGGAGCCCACTAGTAATCTGATACAGGAGCTTCAGAGTAAGTCTGACATGCAGATCAAAAATGAGTTCCCCAATGTAAAAGGGCCTGACCAGCTAAAGTATAAAGGGACAATAACTGACCAGCTGGAAGCTTCTTCTGGAACATCTTACTGTCTTGATCCTGGTAACGTTCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTTCAATCACACCCTAGAAACACACTACCATTTGACACTAATCTTGATGGTCTAACGCCTGATACTATGCTTTTAAGGGGGTATGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGGGATATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATACCTTTTAAGCCTGGTTGCTCCAGTGATGTTGGCATTAATGATACTGGGGTTTTGAATAATGGCATGCGAGCTAACCAAAGTCAACAACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTCACCCGTTACAAGGGATATGATGAACTCCGGTATGATTTGGCTCGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTGCAGCAAATGAGCTTGGATGGTGATTTAGGTAATGTTCCAATCCCCAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCGGCATCATTTAATAGGTAA 3057 0.4354 MTLQPVNKYDKEAILASDMGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDTTWSFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGLRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAMPWLGDDFGMKDASSSIFPGLSLMQWMSMQQNNQFSAAQSGCFPSMLPSNTLHGNLSTDDPSKLLSFQAPVLSAPGLQFNKPNLPSQINQLQQSPMSWPQQQLQQQQQQQQLQSLLQIPINQLQQQRQQQLPEPQNLPLLQQQLPQQLGQQPQKQQQSCQQAIMNNGVVASNQNTNQFVQQPVSFTQLQQQQLLSGGIPPQQNIQSASKNTFPLTSLPQESQFQQQIDQQANLLQRQPQQTQLQQSPLQLLQQSLPQRSPQQPPVTQMSQQNPSEQQLHLQFLQKLQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQNQQLPQLPISQHQTQQLGNNAFSTEKLLNSNNFSSSSLMQSQQLPMNQAQSTQKSLATTRAPSTLTDADAPSCSTSPSTNNCQISPSNLLKRNQQVPATLGGSLVVEPTSNLIQELQSKSDMQIKNEFPNVKGPDQLKYKGTITDQLEASSGTSYCLDPGNVQQNLPLSNFCMEGDVQSHPRNTLPFDTNLDGLTPDTMLLRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNIPFKPGCSSDVGINDTGVLNNGMRANQSQQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPIPNQACSGTDSGNAWRGQYDDNSAASFNR. 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00586 1018 ProSiteProfiles B3 DNA-binding domain profile. 31 133 IPR003340 GO:0003677
Seca12g00586 1018 SUPERFAMILY DNA-binding pseudobarrel domain 21 160 IPR015300 -
Seca12g00586 1018 CDD B3_DNA 30 122 IPR003340 GO:0003677
Seca12g00586 1018 Gene3D - 194 265 - -
Seca12g00586 1018 MobiDBLite consensus disorder prediction 553 575 - -
Seca12g00586 1018 Gene3D - 28 132 IPR015300 -
Seca12g00586 1018 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 980 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca12g00586 1018 FunFam Auxin response factor 29 133 - -
Seca12g00586 1018 Gene3D - 886 980 - -
Seca12g00586 1018 SUPERFAMILY CAD & PB1 domains 904 969 - -
Seca12g00586 1018 MobiDBLite consensus disorder prediction 377 401 - -
Seca12g00586 1018 Pfam Auxin response factor 157 239 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca12g00586 1018 MobiDBLite consensus disorder prediction 650 703 - -
Seca12g00586 1018 FunFam Auxin response factor 886 980 - -
Seca12g00586 1018 ProSiteProfiles PB1 domain profile. 891 984 IPR000270 GO:0005515
Seca12g00586 1018 FunFam Auxin response factor 194 266 - -
Seca12g00586 1018 SMART B3_2 31 133 IPR003340 GO:0003677
Seca12g00586 1018 MobiDBLite consensus disorder prediction 376 401 - -
Seca12g00586 1018 Pfam AUX/IAA family 883 977 IPR033389 -
Seca12g00586 1018 MobiDBLite consensus disorder prediction 996 1018 - -
Seca12g00586 1018 Pfam B3 DNA binding domain 31 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00586 Seca-Chr12 5323420 5332534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00586 1 392 B3 DNA Binding Superfamily AT1G19220 82.908 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca12g00586 AUX_IAA 1.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00586 K14486 - gmx:100805456 735.717