Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00572 ATGGAGGATGCTGCTGGAGGGTCCAAATTAACTGGAAATTGGCAAATTGCAAGACTAAAGGAAATATTCCAGAAGTGGCAAACTGTGACCCTGGGCTCAAAAGAGTCCAATAACCATTCTGGTGTGAATCATGGGGGCATATCTCCAATGATTAATAAAAGGTTAACCAATCTTGTGTATTGTGATTCGGATGAAGATAGCTGCTATAGCCCTCAACCACCACATGATGTTCCCAAAGGGTACTTAGCTGTCTATGTAGGACCAGAGCTTCGGAGGTTCATTATTCCCACAAGCTACCTTAGTCACTCTCTGTTCAAAGTGTTGCTGGAAAAGGCTGCTGAGGAATTTGGGTTTGATCAGAGTGGTGGACTCACCATTCCATGTGAAATTGAGACCTTTAAATACCTCCTGAACTGCATGGAGAACCATCAGCACCATGATGACAATTCCTCCGGAAACACAGGAACTGTTGAAGAGTAA 480 0.4375 MEDAAGGSKLTGNWQIARLKEIFQKWQTVTLGSKESNNHSGVNHGGISPMINKRLTNLVYCDSDEDSCYSPQPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQSGGLTIPCEIETFKYLLNCMENHQHHDDNSSGNTGTVEE. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00572 159 Pfam Auxin responsive protein 68 139 IPR003676 GO:0009733
Seca12g00572 159 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 57 136 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00572 Seca-Chr12 5175548 5177470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00572 3 159 Calmodulin-binding Proteins AT3G43120 66.250 9.34e-72 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00572 K14488 - gmx:100795275 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00572 12 5175548 5177470 Seca12g00572 12 5175548 5177470 ECH
Seca12g00572 12 5175548 5177470 Seca6g03659 6 103804785 103807580 PCT