Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00571 ATGGGTAAAGTTGAAAGTGGGGCGACTTTTTTGGCTTCACTAACACTCCTCCTCCTCCTCACTCTCCCATCCGCTCGAACCATCTTGGACCAACAGCTCGCCGATGCAATCGTGAGGGTTCGCAAAGACGGACGCGGAGACTTCACCACAGTGACGGAAGCCGTTAACAGCATCCCGTCGGGGAACAAACGGCGAGTGGTGATCTGGATCGGGATAGGAGAGTACCGTGAGAAGATCAGGGTGGATCGTTCGAAGCCTTTCGTGACGTTTTATGGAGAAAAGAACGGGAACGACATCCCCGTTATAACGTACGACGCTACAGCGTTGCAGTATGGGACAGTGGATAGCGCCACCGTCACTGTCGAGTCTGACTACTTTGTGGCTGTCAATGTGGCCTTTGTGGTGGGCGCGTTTGTTTTCCCTAACTCATCTCCTATGCCAGAAGAAAAGAGTGTGGGAGCACAAGCGTTAGCGATGAGGATATCAGGGGACAAGGCTGCATTCTACAACTGCAAATTCATCGGATTTCAAGATACCTTGTGCGATGACACAGGCAGACATTTCTTCAAGGACTGCTATATCCAAGGCACCTACGATTTCATTTTTGGAAATGGAAAATCATTCTACTTGACAAGTACCATAAAATCAGTTGCCAAGGGTTTGAGTGTGATCACAGCACAGGGGAGGGAAAGCATGACACAAGACACGGGATTCACTTTTGTGCACTGCAACATTACGGGAATTGGTTACATGAACACTTACCTTGGCCGTGCTTGGAAGAGGAGCCCCAGAGTCATTTTTGCCTACACCTATATGGATTCCGTCGTCAATGCCCGGGGATGGTTTAGTAACCAACTTGCTCAACCCCACCACAATGAGACAGTCTACTACGGAGAATATAGGTGCATGGGACCAGGAGCTACTTCCTCTGGCCGTGTCAAATTTCAAAAGCTACTATCTTATGAAGAAGCAAAGCCCTTCTTGAGCATGGCTTATATTCATGGACAAAATTGGGTCCTCCCTCCCCCTAACCTGTGA 1038 0.4904 MGKVESGATFLASLTLLLLLTLPSARTILDQQLADAIVRVRKDGRGDFTTVTEAVNSIPSGNKRRVVIWIGIGEYREKIRVDRSKPFVTFYGEKNGNDIPVITYDATALQYGTVDSATVTVESDYFVAVNVAFVVGAFVFPNSSPMPEEKSVGAQALAMRISGDKAAFYNCKFIGFQDTLCDDTGRHFFKDCYIQGTYDFIFGNGKSFYLTSTIKSVAKGLSVITAQGRESMTQDTGFTFVHCNITGIGYMNTYLGRAWKRSPRVIFAYTYMDSVVNARGWFSNQLAQPHHNETVYYGEYRCMGPGATSSGRVKFQKLLSYEEAKPFLSMAYIHGQNWVLPPPNL. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00571 345 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 33 339 - -
Seca12g00571 345 Gene3D - 33 341 IPR012334 -
Seca12g00571 345 FunFam Pectinesterase 34 341 - -
Seca12g00571 345 SUPERFAMILY Pectin lyase-like 34 339 IPR011050 -
Seca12g00571 345 Pfam Pectinesterase 39 335 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00571 Seca-Chr12 5172316 5174112 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00571 28 345 Carbohydrate Esterase AT5G07410 51.887 6.48e-120 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00571 K01051 - gmx:100790786 501.901