Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00566 ATGGGGAGAGAAAGAGAGGCACCAAAGCAGCAACAGCAGCAGCAGGTACCTTACACAGTAGAGCAGCTTGTTGCCTTGAATCGGTATAATCCCGATATTCTTCCAGATCTCGAAAACTATGTCAATGAACAGGTTTCATCACAAACATACAGCCTCGATGCAAATCTGTGCCTTCTTCGCCTCTACCAGTTTGAACCAGATAAAATGAGTTCCCAGATTGTAGCCCGCATATTGGTTAAGGCTCTCATGGCAATGCCAGCTCCAGACTTCAGCTTGTGTCTCTTTTTGATTCCAGAACGTGTGCAAATGGAGGAGCAGTTCAAGACACTGATTGTTCTGTCTCACTATTTGGAGACAGGAAGATTTCGGCAGTTCTGGGATGAAGCAGCAAAAAGTCGTCATATAGTTGAAGCTGTGCCAGGATTTGAGCAGGCAATCCAAGGCTATGCTATTCATGTCCTTTCCTTGACTTACCAAAAGGTTCCTAGAACTGTTATAGCTGAGGCTATCAATATAGAAGGTTTATCCTTGGACAAATTCCTTGAACACCAAGTAGCTAACTGTGGTTGGGTTATTGAGAAAAGCCAAGGCAGGGGTCAACTTATTGTCCTTCCTAGAAATGAATTTAATGACCCAGTTTTGAAGAAAAACACCGCAGATAGTGTACCATTGGAGCACATTACTCGCATCTTCCCTATTCTTAGCTGA 708 0.4364 MGREREAPKQQQQQQVPYTVEQLVALNRYNPDILPDLENYVNEQVSSQTYSLDANLCLLRLYQFEPDKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGRFRQFWDEAAKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKVPRTVIAEAINIEGLSLDKFLEHQVANCGWVIEKSQGRGQLIVLPRNEFNDPVLKKNTADSVPLEHITRIFPILS. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00566 235 Gene3D - 131 234 IPR036388 -
Seca12g00566 235 Gene3D ARM repeat; domain 1 10 128 IPR016020 GO:0003743|GO:0005852|GO:0006446|GO:0043022
Seca12g00566 235 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 7 232 IPR009374 GO:0003743|GO:0005737|GO:0005852
Seca12g00566 235 FunFam Eukaryotic translation initiation factor 3 subunit K 11 128 - -
Seca12g00566 235 SUPERFAMILY "Winged helix" DNA-binding domain 140 232 IPR036390 -
Seca12g00566 235 SUPERFAMILY ARM repeat 13 137 IPR016024 -
Seca12g00566 235 Pfam CSN8/PSMD8/EIF3K family 70 196 IPR033464 -
Seca12g00566 235 FunFam Eukaryotic translation initiation factor 3 subunit K 131 234 - -
Seca12g00566 235 Hamap Eukaryotic translation initiation factor 3 subunit K [EIF3K]. 11 235 IPR009374 GO:0003743|GO:0005737|GO:0005852
Seca12g00566 235 ProSiteProfiles PCI domain profile. 50 209 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00566 Seca-Chr12 5046463 5048945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00566 1 235 Eukaryotic Initiation Factors Gene Family AT4G33250 74.894 9.89e-130 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00566 K15028 - gmx:100306445 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00566 12 5046463 5048945 Seca12g00566 12 5046463 5048945 ECH