Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00556 ATGGCTCTCTCTACCACAAAAAAGCCATTGAGAAGAACACCTACTATCACATTCATCCTCTTGCTGGTATTATGCACCAGCACCACCCCATCCTCGGGTGCTGCTCACACTGATTTCTTGGGATCAGCCTGCCTCAAAGTTTCTCCCGCCAAATTTGTCAACTCTATCAGTGAAGTTGTTGGTGTTATACGAACGGTTTCATCCATTTTGTCACGCTTCAGCAGTGGCTTCGGCAACTTTCATCTCTCAAACGCCATAACTGACTGTCTCGATTTGCTTGACTTGTCCTCTGACGCGCTTTCCTGGTCTGTTTCCGCCACTCAGAGTCCCAAAGGGAAGCATAACAGTACGGGGGACCTAAGTTCTGATTTGAGGACGTGGCTGAGTTCTGTACTTGCGAATCCAGAAACGTGCATGGAGGGATTTGAAGGTACAAATAGCATTGTGAAAGGTTTAGTATCAAGTGGTCTTGGCCAAGTGATGTCGTTAGTGAAGGAGATTCTTGTTCAAGTGGTTCCTGCTGCTGCTGCATCGGATCAATTCTCTACCAGCAAGGGTCAATTTCCTTCATGGATTAAACCAAGGGAGAGGAAGCTGTTACAGGCGAATGGAGTCACTGCGGATGCTGTGGTGGCTGCAGATGGAACTGGAAACTACGCTAAGGTGATGGATGCGGTGCTGGCAGCACCTGACTATAGCATGAAACGGTATGTTATATACATAAAGAAAGGTGTTTATGTGGAGAATGTTGAGATCAAGAAGAAGAAATGGAACATCATGATGATTGGAGATGGTATGGATGCTACTATTATCACCGGTAATCGGAGCGTTGTTGATGGATGGACCACATTCCGATCAGCTACCTTTGCTGTCAGTGGCAGAGGTTTCATAGCACGGGACATTTCTTTTCAGAACACTGCAGGACCTGAGAAGCACCAAGCAGTAGCACTGAGATCAGACTCTGACCTCTCTGTATTCTACCGATGTGGGATCTTTGGTTACCAAGACAGCTTATATACTCACACTATGCGCCAATTCTTCAGAGAATGCAAAATCAGTGGCACAGTGGATTTCATCTTTGGAGATGCCACTGCTGTGTTCCAAAACTGCAGAATACTAGCTAGGAAAGGCTTGCCAAGTCAAAAGAACACCATCACAGCTCAAGGTAGGAAAGATCAGAATGAACCAACTGGTTTCTCCTTCCAATTCTGTAACATCTCTGCAGATTCTGACCTTCTACCTTCAGTTAGTTCCACTGAAACATACCTTGGAAGACCCTGGAAAACTTATTCAAGAACAGTTTTCATGCAATCATATATGAGTGATGTGATAAGGCCACAGGGGTGGATAGAGTGGAATGGAAATTTTGCTTTGGATACGTTGTACTATGCTGAGTACATGAACTCAGGACAAGGTGCAGGACTAGCTAACCGAGTGAAATGGTCAGGGTACCATGCATTGAATGATTCTAAGCAAGCTAGTAACTTCACGGTGGCTCAATTTATTGAGGGGAATCTATGGTTACCTTCCACAGGTGTAACATCTCTCTGCAGAACCACCCCATACCCTGAAGCTTGCTTCAATTCATCAAAGCTCACAATCTCAATAAACATAAATCCAAACATCATCAACATCCTTCTTCAGTCCCTCCAAGTAGCAATATCTGAAGCCACAAAACTATCTGATCTATTCAACAATGCTGGATCCTCAAACATCATTGAGAACAAAAGAGGAGCAGTCCAAGACTGTAGAGAACTCCAACAATCCACCTTGACTTCCTTAAAAAGATCAGAATCTGGGGTTCGTTCCCAAAACACAAGGAAGTTAGTTGATGCAAGAGCCTACCTCAGTGCAGCCCTCACCAACAAGAACACATGTCTAGAAAGCTTAGATTCTGCTTCAGGTACCATGAAGCCAGTTCTAGTGAATTCTGTGATCAATTCTTACAAGCATGTCAGTAATTCTCTTTCAATGCTCCCTAAGCCTGAAATGAAGGCTCCCAAAGGACTCAAGAACCGGCGTTTAATGGATGCTCCAACATGGTTGTCAAGCAAAGACCTTCGCTTCTTACAAAACACTGATGAAGCTCCTGTGCTTGTTGTGGCTAAAGATGGAACAGGGAACTTTAGTACTATCACTGAAGCCATCAACTTTGCTCCAAATAACAGCTTTGATAGGACAATAATCTATGTCAAAGAAGGGGTATATGAGGAAAATGTGGAAATCCCAAGTTATAAGACAAATATTGTTCTGCTTGGAGATGGAAAGGATGTCACTTTCATTACTGGCAGTAGAAGTGTCATTGATGGCTGGACCACTTTCAGATCTGCAACTTTAGCTGTCTCTGGGGAGGGCTTTTTGGCACGTGATATAGCTATTGAGAACAAGGCAGGGCCAGAGAAGCATCAAGCAGTTGCCTTGAGAGTGAATGCAGACTTGACTGCTTTTTACAGGTGTGCCATGTGTGGTTTTCAAGACACTCTTTATGTTCACTCCTTTAGACAATTCTATAGAGAGTGTGACATTTTTGGGACTATAGATTTCATATTTGGGAATGCTGCAGTGGTTTTACAGGCATGTAACATAGTGTCTAGAAAGCCAATGCCTGGCCAATTCACTGTTATCACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATCTCAATCCAAAACTGTTCAATTTTAGCTACTACTGATTTGTATTCCAGCTCTAGCAGCTTCAAGAGCTACCTTGGGAGGCCATGGAGGGTCTATTCTCGCACTGTTTACCTTCAGTCCTACATTGATATGTTTATTGATCCAACAGGGTGGACAAAATGGAATGATGATGAAGGCTTGGACACTTTGTATTATGGAGAGTTTGCAAATTATGGGCCTAGTTCAGGGACAGATAAGCGAGTAAAATGGCCTGGGTACCATTTAATGGATTACAATAGTGCCTATAACTTCACAGTCTCAGAGTTCATTATTGAACGGCGAAGAAATGAGAAGAGACAAAAGATGAGGAAGAGGATCCTCATTGGTGTTGTTTCTGCCATTGTCCTCGTTGGTCTTATAGGTTGTGCATTCTTCGTTGTTACCTCAAAAAATGGTGATGGTAAAGAGGAGGAGGCTAAGACTTCTCCAACAGCAAAAGCATCTGCAGGTGCTAAGCAAATAACACATTCAGAAAAGTTTGTGAAAATGGTATGCAGCACTGCTGATTATAAAGAAAAATGTGAAGGCCCTCTTAACAAGGCAGTGAAGGATGACCCCAAACTCACACAAACACCAAAAGAGCTTATCAAGCTCTATGTCAAACTTGCTGAGGAAGAGATTAACAAGGCCTTCAACAAAACAGAATCCATGAAGTTTGAATCTGAAAAAGAAAAAGGAGCCTATGAGGATTGCAAGACATTGTTTGAGGATGCTAAAGATGACTTAGCAACCTCTATCTCTGAACTTGGTAAAATTGAATTCAAGAAACTCTCCACAAGATCTCAAGATTTCAAGAGTTGGCTCAGTGCAGTCATCTCTTTCCAACAAACATGTATTGATGGTTTTCCAGAAGAAGGAAAATTGAGGGATGAACTTCAGAGTCTCTTTAAGGACTCCAAGGAATTTGTTAGCAATTCCCTTGCCATTGTGTCTCAAGCTGGTGCTTTCCTTTCAACATTCCAAGCACTTGCACGTGGTCGTCGTTTGTTGCTGTCAGAGGATGCCAACTCCCCACCAGTTGCTACTTTAGATGAAGATGGCTTCCCTGAATGGGTTCATGATGAGGACAGAAGGATGTTGAAGGCTGCAGATAACAGACCTACACCTAATGTCACTGTGGCAAAAGATGGCAGTGGAAAATTCAAAACCATCTCTGAAGCTTTAGCAGCCATCCCTCAAAACTATGAAGGACGGTATGTGGTTTTTGTTAAGGAAGGAATATATGATGAGACAGTGACAATTACAAAGAATATGCAAAATTTAACTATGTATGGTGATGGATCTCAAAAGAGCATCATCACTGGTAACAAAAACTTTAGGGATGGAGTCAGGACTTTCCAAACTGCAAGTTTTGTGGTGCTTGGAGAAGGATTTGTGGGGCTAGCAATGGGATTCAGAAACACTGCTGGTCCTGATGGGCATCAAGCAGTGGCTGCTAGAGTGCAAGCAGATCGTGCAGTGTTTGCAAACTGTCGCTTTGAGGGCTACCAAGACACCCTATACACTCAAACCCACAGACAATTCTACCGTAGTTGTATTGTTTCAGGCACAATTGATTTCATCTTTGGTGATGCAGCTGTTGTGTTCCAGAACTGCATCATGATTGTTAGGAAACCAATGGACAACCAGCAGAACATGGTGACTGCTCAAGGAAGAACAGACAAGCAACAAAACACTGGAATTGTTCTGCAAAAATGTACTATCAAAGCTGATGATGCATTCATTCCTGTGAAAGACAAAATCAGGAGCTACCTTGGGAGGCCATGGAAGGAATTCTCAAGAACAATTGTTATGGAATCAGAAATAGGTGATTTCATTCACCCTGATGGGTGGACACCTTGGATGGGTGATTTTGCACTCAATACACTGTATTATGCTGAGTTCAACAACACAGGACCTGGTGCTAGCACCACCAATAGGGTCAAGTGGCCTGGTTACCATGTCATTAACAAGGAGGAGGCTAACAAGGGAGCAGAGATGGCATCAAGAAAAGGTTTTAATCATCACATGCTTCTGCCAATCCTGCTAATGAATTGCTTTGTCTTGCTGGGTCATTGTGCTAGGCCTAGACTGCAGAGCACAGAAGAGGGAGAGGATTTGGTTACAGCAACATGCAAGCACACCCTTTATTTTGAAGTATGTGTTTCTTCCTTAAGATCAGTTCCTAGTAGCAATACATCAGATCTCAAAATGCTTGCTGAGATTGCTTTAAATCTGAGCAAAATACATGCTACAAAGACATTGTCCTGTGTCTATGAGTTGAAGTCTTCTGCAGCCAATGGCACCAATAGCAGTTACACGTCCCGTTGCTTAAGTGACTGTGAAGAGGAATACTCAGAAGCCATAGATAATTTGCAGGACTCAGAAGAAGCACTTGCTAATGGAGATTATGACAAAGTGGATACATTGGTTTCAGCTGCTATGTCAGATGCTGAGACATGTGAGGATGGCTTCAAAGACATGCTTAGTGATGACAATGGTTCCAACTCTCCTCTTTCTGAGCGTAACCGTTACTTCTCTGAATTGTGTAGTAATGCTTTAGCCATTACAAAACTATTAGCTTGA 5268 0.43 MALSTTKKPLRRTPTITFILLLVLCTSTTPSSGAAHTDFLGSACLKVSPAKFVNSISEVVGVIRTVSSILSRFSSGFGNFHLSNAITDCLDLLDLSSDALSWSVSATQSPKGKHNSTGDLSSDLRTWLSSVLANPETCMEGFEGTNSIVKGLVSSGLGQVMSLVKEILVQVVPAAAASDQFSTSKGQFPSWIKPRERKLLQANGVTADAVVAADGTGNYAKVMDAVLAAPDYSMKRYVIYIKKGVYVENVEIKKKKWNIMMIGDGMDATIITGNRSVVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFFRECKISGTVDFIFGDATAVFQNCRILARKGLPSQKNTITAQGRKDQNEPTGFSFQFCNISADSDLLPSVSSTETYLGRPWKTYSRTVFMQSYMSDVIRPQGWIEWNGNFALDTLYYAEYMNSGQGAGLANRVKWSGYHALNDSKQASNFTVAQFIEGNLWLPSTGVTSLCRTTPYPEACFNSSKLTISININPNIINILLQSLQVAISEATKLSDLFNNAGSSNIIENKRGAVQDCRELQQSTLTSLKRSESGVRSQNTRKLVDARAYLSAALTNKNTCLESLDSASGTMKPVLVNSVINSYKHVSNSLSMLPKPEMKAPKGLKNRRLMDAPTWLSSKDLRFLQNTDEAPVLVVAKDGTGNFSTITEAINFAPNNSFDRTIIYVKEGVYEENVEIPSYKTNIVLLGDGKDVTFITGSRSVIDGWTTFRSATLAVSGEGFLARDIAIENKAGPEKHQAVALRVNADLTAFYRCAMCGFQDTLYVHSFRQFYRECDIFGTIDFIFGNAAVVLQACNIVSRKPMPGQFTVITAQSRDSPDEDTGISIQNCSILATTDLYSSSSSFKSYLGRPWRVYSRTVYLQSYIDMFIDPTGWTKWNDDEGLDTLYYGEFANYGPSSGTDKRVKWPGYHLMDYNSAYNFTVSEFIIERRRNEKRQKMRKRILIGVVSAIVLVGLIGCAFFVVTSKNGDGKEEEAKTSPTAKASAGAKQITHSEKFVKMVCSTADYKEKCEGPLNKAVKDDPKLTQTPKELIKLYVKLAEEEINKAFNKTESMKFESEKEKGAYEDCKTLFEDAKDDLATSISELGKIEFKKLSTRSQDFKSWLSAVISFQQTCIDGFPEEGKLRDELQSLFKDSKEFVSNSLAIVSQAGAFLSTFQALARGRRLLLSEDANSPPVATLDEDGFPEWVHDEDRRMLKAADNRPTPNVTVAKDGSGKFKTISEALAAIPQNYEGRYVVFVKEGIYDETVTITKNMQNLTMYGDGSQKSIITGNKNFRDGVRTFQTASFVVLGEGFVGLAMGFRNTAGPDGHQAVAARVQADRAVFANCRFEGYQDTLYTQTHRQFYRSCIVSGTIDFIFGDAAVVFQNCIMIVRKPMDNQQNMVTAQGRTDKQQNTGIVLQKCTIKADDAFIPVKDKIRSYLGRPWKEFSRTIVMESEIGDFIHPDGWTPWMGDFALNTLYYAEFNNTGPGASTTNRVKWPGYHVINKEEANKGAEMASRKGFNHHMLLPILLMNCFVLLGHCARPRLQSTEEGEDLVTATCKHTLYFEVCVSSLRSVPSSNTSDLKMLAEIALNLSKIHATKTLSCVYELKSSAANGTNSSYTSRCLSDCEEEYSEAIDNLQDSEEALANGDYDKVDTLVSAAMSDAETCEDGFKDMLSDDNGSNSPLSERNRYFSELCSNALAITKLLA. 1756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00556 1755 Gene3D Invertase/pectin methylesterase inhibitor family protein 1058 1214 IPR035513 -
Seca12g00556 1755 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 172 IPR035513 -
Seca12g00556 1755 CDD PMEI-like_3 515 658 - -
Seca12g00556 1755 ProSitePatterns Pectinesterase signature 2. 1415 1424 IPR033131 -
Seca12g00556 1755 CDD PMEI-like_1 1601 1754 - -
Seca12g00556 1755 SUPERFAMILY Pectin lyase-like 696 992 IPR011050 -
Seca12g00556 1755 NCBIfam pectinesterase inhibitor domain 1571 1754 IPR006501 GO:0004857
Seca12g00556 1755 NCBIfam pectinesterase inhibitor domain 1055 1213 IPR006501 GO:0004857
Seca12g00556 1755 NCBIfam pectinesterase inhibitor domain 511 658 IPR006501 GO:0004857
Seca12g00556 1755 SUPERFAMILY Pectin lyase-like 1268 1556 IPR011050 -
Seca12g00556 1755 CDD PMEI-like_4 15 173 - -
Seca12g00556 1755 Pfam Plant invertase/pectin methylesterase inhibitor 24 155 IPR006501 GO:0004857
Seca12g00556 1755 Pfam Plant invertase/pectin methylesterase inhibitor 1600 1750 IPR006501 GO:0004857
Seca12g00556 1755 Pfam Plant invertase/pectin methylesterase inhibitor 513 658 IPR006501 GO:0004857
Seca12g00556 1755 Pfam Plant invertase/pectin methylesterase inhibitor 1060 1210 IPR006501 GO:0004857
Seca12g00556 1755 SUPERFAMILY Pectin lyase-like 206 514 IPR011050 -
Seca12g00556 1755 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Seca12g00556 1755 Coils Coil 1672 1692 - -
Seca12g00556 1755 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1600 1754 IPR035513 -
Seca12g00556 1755 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Seca12g00556 1755 CDD PMEI-like_3 1065 1212 - -
Seca12g00556 1755 FunFam Invertase/pectin methylesterase inhibitor family protein 1597 1755 - -
Seca12g00556 1755 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 1060 1213 IPR035513 -
Seca12g00556 1755 ProSitePatterns Pectinesterase signature 2. 842 851 IPR033131 -
Seca12g00556 1755 FunFam Pectinesterase 692 1002 - -
Seca12g00556 1755 FunFam Pectinesterase 1058 1215 - -
Seca12g00556 1755 PANTHER PECTINESTERASE 1021 1557 - -
Seca12g00556 1755 FunFam Pectinesterase 510 661 - -
Seca12g00556 1755 FunFam Pectinesterase 202 518 - -
Seca12g00556 1755 FunFam Pectinesterase 1265 1566 - -
Seca12g00556 1755 Gene3D - 1266 1569 IPR012334 -
Seca12g00556 1755 Gene3D - 202 513 IPR012334 -
Seca12g00556 1755 Gene3D - 693 1004 IPR012334 -
Seca12g00556 1755 SMART PMEI_2 1057 1210 IPR006501 GO:0004857
Seca12g00556 1755 SMART PMEI_2 508 658 IPR006501 GO:0004857
Seca12g00556 1755 SMART PMEI_2 1597 1750 IPR006501 GO:0004857
Seca12g00556 1755 SMART PMEI_2 35 170 IPR006501 GO:0004857
Seca12g00556 1755 Pfam Pectinesterase 1271 1556 IPR000070 GO:0030599|GO:0042545
Seca12g00556 1755 Pfam Pectinesterase 699 991 IPR000070 GO:0030599|GO:0042545
Seca12g00556 1755 Pfam Pectinesterase 208 505 IPR000070 GO:0030599|GO:0042545
Seca12g00556 1755 Gene3D Invertase/pectin methylesterase inhibitor family protein 514 661 IPR035513 -
Seca12g00556 1755 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 163 IPR035513 -
Seca12g00556 1755 Gene3D Invertase/pectin methylesterase inhibitor family protein 1597 1755 IPR035513 -
Seca12g00556 1755 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 513 659 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00556 Seca-Chr12 4947780 4965407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00556 553 991 Carbohydrate Esterase AT3G43270 47.149 9.96e-127 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00556 - K01051 gmx:100784679 869.381