Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00550 ATGAGTTTCTACGTTGAGGACCCTCTCTCTGGTTTGACAATTGGTCAGGCTATATACGAGGCAGCTCTAATCATTGCAGTTCTGAGATGGATCTTCTGCTTGGTTTTCAGAGTGATCAGAGATAGGAGAAGGACACGCTCAGATGAATCTTCTTCTTCTTCTTCTTCTTGGGAAGAATCTTCTCACATGATGGTAAGGGATAATAACCCTCTACCGTTGACCACTTTTGGTGAGATCATGGAGAGGATGCCAGAAACAGAGGACACATGTGCTATTTGCTTGAACCACCTGAAAATGGAAGATGAGGTTAGGGAACTGATGAATTGTTACCATGTGTTCCATAAGGAATGCATAGATAGATGGTTGGAACATGACCATGACAATGAAACCCATAACCCAACTTGTCCATTATGCAGAGCCCCTTTGTTGAGTTCTTATTGCCTTTCATCAGAGAGTTCAAGCTGTGTGCCTCCACCTCAACCTAGCTGGGCTGTGGATAGACTTCTCTATCTCTTTGGGGATGATCTTCTACCTTATTAG 540 0.4352 MSFYVEDPLSGLTIGQAIYEAALIIAVLRWIFCLVFRVIRDRRRTRSDESSSSSSSWEESSHMMVRDNNPLPLTTFGEIMERMPETEDTCAICLNHLKMEDEVRELMNCYHVFHKECIDRWLEHDHDNETHNPTCPLCRAPLLSSYCLSSESSSCVPPPQPSWAVDRLLYLFGDDLLPY. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00550 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 146 IPR013083 -
Seca12g00550 179 ProSiteProfiles Zinc finger RING-type profile. 90 139 IPR001841 -
Seca12g00550 179 PANTHER RING ZINC FINGER PROTEIN-RELATED 23 177 - -
Seca12g00550 179 Pfam Ring finger domain 88 139 IPR001841 -
Seca12g00550 179 SUPERFAMILY RING/U-box 84 145 - -
Seca12g00550 179 SMART ring_2 90 138 IPR001841 -
Seca12g00550 179 SMART ringv_2 89 139 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00550 Seca-Chr12 4881917 4882456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00550 1 176 C3H Transcription Factor Family AT5G20885 46.073 6.72e-41 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00550 K16281 - gmx:100306203 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00550 12 4881917 4882456 Seca12g00550 12 4881917 4882456 ECH