Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00549 ATGGCTAATTCATTACTTAAGTTTGCTCTGGATTCAGTGGATTGCTTTATGATATCATTTTTTGATAATTTACAATACAAAATTTACAGTTCTACGTTTAACCTTGGTCATGTAACTAATGGTACCTCAGACAGACCCCAGACTGATTATGAAGTTAATGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGACGTTGCTGCTGTGAAGAAACTTCTTAATGAGGGCGTGGATGCAAATTACAGGGACAAGCAAGGATTGTCTTTATTGCATTTGGCTGCAGTCTTCAATCAAACTGATATAGCTTTCATCCTCATGGATTCGGGGGCAAGCCTGGAGTACAAAAATGCACAAGGCAATCAATCTTTTCCCTTACTCTATTCAGCCAGAGAAACGCCTTTAGATTGTGCCCCAGCTACATTGCAATACAAAATGCGAAAGAAGATGGAAGAAGGTGGGGCAATGGACCAAAGAATTTGA 480 0.3917 MANSLLKFALDSVDCFMISFFDNLQYKIYSSTFNLGHVTNGTSDRPQTDYEVNGEGLREAIKNGDVAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQTDIAFILMDSGASLEYKNAQGNQSFPLLYSARETPLDCAPATLQYKMRKKMEEGGAMDQRI. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00549 159 ProSiteProfiles Ankyrin repeat profile. 57 84 IPR002110 GO:0005515
Seca12g00549 159 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Seca12g00549 159 Gene3D - 36 152 IPR036770 -
Seca12g00549 159 SMART ANK_2a 52 81 IPR002110 GO:0005515
Seca12g00549 159 SMART ANK_2a 85 114 IPR002110 GO:0005515
Seca12g00549 159 ProSiteProfiles Ankyrin repeat region circular profile. 85 116 - -
Seca12g00549 159 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 35 153 - -
Seca12g00549 159 SUPERFAMILY Ankyrin repeat 57 137 IPR036770 -
Seca12g00549 159 Pfam Ankyrin repeats (3 copies) 59 115 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00549 Seca-Chr12 4879461 4880652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00549 63 123 MAP Kinase Kinase Kinase AT4G18950 36.066 1.10e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00549 - - gmx:100814367 216.083