Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00547 ATGTCTGGTTTGAACCTCGAGACAGACTTTTTTACAGCTTCTCCTTCTGTTATGGAGGCTCCTTTTGCTCGTATTAGTAATGTTGATGGAATGAGTAACCAGATAAGTGTTTGTGATGAAGGATCCATGAAGCATTTCTCTGCTAACTGGCCAGTGCCAACATCTGGACTGAATGCAGTGACTCCTGGTACAACTCAGTTTGCCATCTGCTATAAGGGGAGTATGTGCATCTATGATGGAATTCCTGCAAAAACGGTGCGTGAAATAATGTTGATTGCTGCTGCTGCTACCAAGTCTGCTGAAATGAAGAGAGGGATCCCCTTCACTTCACTAATTCCCACAAGCACTCCTTCTCCACAAGGAACCTCTAATAATTTGGCTTCTCAGCAGTCAGTCTGCTTTCCTGCTGAGAAGAGTTCCATGTGCAGGCTGCAAGAATTTCCAATAGCACGCAGACAGTCACTTCAAAGGTTTCTTGAGAAGCGACGAATCAGGTTGGGTAGCAAAGCCCCTTATGCCTCCTCAACAAAAGGACTTCTGGCCAACATGGAAAACAACTTCTGTGATGACAATACACCAGATTTTGCTTCCTTCAACGATCAAGGGAGGGGTTTCAGCCATGTATTACTGTCTCTTAAGGGCAATTAG 648 0.4475 MSGLNLETDFFTASPSVMEAPFARISNVDGMSNQISVCDEGSMKHFSANWPVPTSGLNAVTPGTTQFAICYKGSMCIYDGIPAKTVREIMLIAAAATKSAEMKRGIPFTSLIPTSTPSPQGTSNNLASQQSVCFPAEKSSMCRLQEFPIARRQSLQRFLEKRRIRLGSKAPYASSTKGLLANMENNFCDDNTPDFASFNDQGRGFSHVLLSLKGN. 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00547 215 SMART tify_2 60 95 IPR010399 -
Seca12g00547 215 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Seca12g00547 215 Pfam tify domain 62 94 IPR010399 -
Seca12g00547 215 Pfam Jas motif 148 172 IPR018467 -
Seca12g00547 215 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 52 177 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00547 Seca-Chr12 4867528 4871880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00547 66 175 Tify Gene Family AT5G20900 43.103 3.73e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca12g00547 tify 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00547 K13464 - gmx:100306655 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00547 12 4867528 4871880 Seca6g03639 6 103645766 103648991 PCT