Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00544 ATGGCGACACCCAATGCGACATGTCCAGCACCAATGAAGGCCACGTCCAATGGGGCATTTCAACATGAAAACCCTCTAGACTATGCACTTCCCCTGTTAATTCTCCAGATATGCTTGGTCGTGACCTTCACTAGATTCATTGCATTCCTTTGCAAACCCCTCAGGCAACCCAGAGTCATTGCTGAGATCATTGGAGGAATACTACTTGGGCCATCTGCAATTGGACGAAGCGAGACATTCTTGAACACAGTTTTCCCAAAGAAAAGCTTAACTGTGCTTGACACACTCGCCAACATTGGCCTTTTGTTTTTCTTGTTTCTAGTGGGTCTTGAGCTTGATTTGCGTTCTATCAAGCGTACTGGTCAAAAAGCTATAGCCATAGCCGTTTGTGGGATCACTGTCCCTTTTGTTCTTGGCATTGGCACATCTTTTGTTCTTCGAGCTACCATATCCAAAGGTGTTGAGCCACTTTCCTTCCTTGTCTTCATGGGTGTTGCTCTCTCAATCACTGCCTTTCCTGTACTTGCTAGAATCTTAGCTGAGCTTAAACTCCTCACTACTGATGTTGGCCGTATAGCAATGTCAGCTGCTGCTGTCAATGATGTTGCAGCTTGGATACTTCTTGCTCTTGCAATAGCCCTCTCTGGCTCTAACTCATCCCCCTTGATCTCTCTTTGGGTCTTGCTCTGTGGTGCTGCTTTTATCATCTTTGCTGTCCTTACCATAAGACCCTTGCTTGCAGCTATGGCTAGGCGTTCCCCTGAAGGTGAACCAGTGAAGGAGATCTACATTTGCATCACATTGACATTAGTTTTGGCTTGTAGTTTTGTCACTGATACTATTGGAATTCATGCCCTCTTTGGGGCTTTTGTTGTTGGTGTAATTGTGCCCAAAGATGGTCCCTTTGCTGGGGTGTTGATTGAGAAGATAGAAGACTTGGTATCTGGACTTTTCCTGCCACTCTATTTTGCATCTAGTGGTTTGAAGACAAATGTGGCTACTATTAGTGGAGGACTTTCTTGGGGATTACTAGTACTTGTTATATTCAATGCTTGCTTTGGGAAAATCATTGGTACAGTCGTTGTATCATTAATATGCAAGGTGCCTTTTAGAGAATCCCTGGCACTTGGATTTCTCATGAACACCAAGGGCTTGGTAGAGCTTATTGTTCTCAATATTGGAAAGGATCGCAAGGTACTGAATGACCAATCATTTGCCATTTGTGTCCTTATGGCATTGTTTACCACCTTCATCACCACTCCAATAGTGATGGCTGTGTATAAACCAGCTCGCAGAGGAGCACCTTACAAGCACAAAACAATTCAGCGCAAAGATCTTGACTCAGAGCTCAGAGTGCTAGCTTGCTTCCACAGCACCCGCAACATCCCCACATTGATCAATCTCGTAGAGTCTTCCAGAGGAACCCGTAAGAGAGGGAAGCTTTGTATATATGCAATGCACTTGATGGAACTCTCAGAGCGATCTTCAGCTATCACAATGGTTCACAAGGCACGCAACAATGGCATGCCATTCTGGAACAAGAAACAGGATGAGAAAGATCAAATGGTCATTGCTTTTCAAACTTATGGAAAATTAAGCAGTGTCAATGTCCGCCCCATGACAGCTATCTCAGCTCTCAGTAACATCCATGAGGATATTTGTACTAGTGCACACCAAAAGCGTGCATCCATAATTCTGCTCCCATTCCACAAACACCAGCGTGTGGATGGATCAATGGAGTCACTAGGACATTCATTCCATGTGATAAATGAGCTTGTGCTAAGCCATGCTCCTTGCTCAGTGGGAATTTTGGTTGATCGTGGTCTTGGAGGGACAAGCCAAGTCCAAGCTAGTGATGTGTCCTTTAATGTAGTTGTACCTTACTTTGGAGGACGTGATGATAATGAAGCACTTGCATATGGGATGAGAATGGCTGAACATCCAGGGATTTTGCTCAATGTGGTTAAGTTTGTAGCTACACCAGGGAAGACATTGGCTTTTGGTGCTAAATTGGTTGGGGTATCATCAGACAAGGGCCAGAAAGTAGCAATTGAGGAAATTGATGGCAGTAGCCATGATGGTAAACAACATGATGATCAATTGTGGAGTGAGTTCTTGAGTGCAAGCAGCAACAATGAAGAGTCAATTAAGTATGAGGAAAGGTTGGTGGAAAGTAAAGGTGACATTGAGACAGCATTGAAGGAAATGAGCAGGAGCAATCTGATATTGGTTGGTAGAATGCCACCAGTAGCACCTTTGGTTAGCAAGAGTGATTGCGCAGAGCTTGGACCTATTGGAAGCTATATGGCTTCTTCTGGTTTCTCAACCACTGCATCAGTTTTGGTTATTCAGCAATATAATCCCTCAACTGACATTCATCCACTGGTGATGGAGGCATCTGATTACCCAGAAGTGCCCGATACACCAAGGGTATAA 2436 0.4429 MATPNATCPAPMKATSNGAFQHENPLDYALPLLILQICLVVTFTRFIAFLCKPLRQPRVIAEIIGGILLGPSAIGRSETFLNTVFPKKSLTVLDTLANIGLLFFLFLVGLELDLRSIKRTGQKAIAIAVCGITVPFVLGIGTSFVLRATISKGVEPLSFLVFMGVALSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIALSGSNSSPLISLWVLLCGAAFIIFAVLTIRPLLAAMARRSPEGEPVKEIYICITLTLVLACSFVTDTIGIHALFGAFVVGVIVPKDGPFAGVLIEKIEDLVSGLFLPLYFASSGLKTNVATISGGLSWGLLVLVIFNACFGKIIGTVVVSLICKVPFRESLALGFLMNTKGLVELIVLNIGKDRKVLNDQSFAICVLMALFTTFITTPIVMAVYKPARRGAPYKHKTIQRKDLDSELRVLACFHSTRNIPTLINLVESSRGTRKRGKLCIYAMHLMELSERSSAITMVHKARNNGMPFWNKKQDEKDQMVIAFQTYGKLSSVNVRPMTAISALSNIHEDICTSAHQKRASIILLPFHKHQRVDGSMESLGHSFHVINELVLSHAPCSVGILVDRGLGGTSQVQASDVSFNVVVPYFGGRDDNEALAYGMRMAEHPGILLNVVKFVATPGKTLAFGAKLVGVSSDKGQKVAIEEIDGSSHDGKQHDDQLWSEFLSASSNNEESIKYEERLVESKGDIETALKEMSRSNLILVGRMPPVAPLVSKSDCAELGPIGSYMASSGFSTTASVLVIQQYNPSTDIHPLVMEASDYPEVPDTPRV. 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00544 811 FunFam Cation/H(+) antiporter 15 32 434 - -
Seca12g00544 811 Pfam Sodium/hydrogen exchanger family 38 422 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca12g00544 811 Gene3D - 32 434 IPR038770 -
Seca12g00544 811 PANTHER CATION/H + ANTIPORTER 7 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00544 Seca-Chr12 4854496 4857911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00544 1 804 Antiporter Super Family AT3G17630 70.720 0.0 1140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00544 K26731 - gmx:100780382 1332.39