Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00538 ATGGGAACATTGGAACAAATTGATGCTCATCAAGCTCAGTCATCATCATCTTCATCTTCTTCCATTGATAGCAACAACCACCCTTCTGGGACACCACCACCACCCTCTTCCTCTTCATCTCTGCCTCTCTGCAGAAACAGAAACAGAACTGATTTGAGCACTGACCTCCGACTTGGTCTCAGCATCTCTCCTTTTTCTCAATCAACATTCAATTCAACACCAAGGGAGGAAAGTTTTGACTGGCCACCAATTAAGTCCACATTGAGGAGCACCCTGATTGAGAAACAAAACCAAAGACCCTCTTTATTTGTCAAAGTCTATATGGAAGGCATCCCCATAGGTAGAAAATTAAATCTGTTGGCACATCACAGCTATGATGGACTTGTAAAAGCTCTTGGCCATATGTTTAGGACCATCATTCTCTGTCCTAACTCTCAACCACTTAATTCTGGGAATTTTCATGTGCTAACTTATGAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCATGGGAGATGTTCTTGACCAGTGTGAAGAGACTGAAGATCACAAGAGCTGACAGATGCTAG 576 0.434 MGTLEQIDAHQAQSSSSSSSSIDSNNHPSGTPPPPSSSSSLPLCRNRNRTDLSTDLRLGLSISPFSQSTFNSTPREESFDWPPIKSTLRSTLIEKQNQRPSLFVKVYMEGIPIGRKLNLLAHHSYDGLVKALGHMFRTIILCPNSQPLNSGNFHVLTYEDQEGDWMMVGDVPWEMFLTSVKRLKITRADRC. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00538 191 ProSiteProfiles PB1 domain profile. 101 190 IPR000270 GO:0005515
Seca12g00538 191 Gene3D - 95 191 - -
Seca12g00538 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 52 189 IPR003311 GO:0005634|GO:0006355
Seca12g00538 191 SUPERFAMILY CAD & PB1 domains 97 185 - -
Seca12g00538 191 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g00538 191 Pfam AUX/IAA family 76 187 IPR033389 -
Seca12g00538 191 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00538 Seca-Chr12 4777214 4779334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00538 83 185 B3 DNA Binding Superfamily AT1G59750 35.922 4.94e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca12g00538 AUX_IAA 3.8e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00538 K14484 - gmx:100527448 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00538 12 4777214 4779334 Seca12g00538 12 4777214 4779334 ECH