Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00533 ATGGAAGGTGAAGTTGCAATGAAAAAATGGCTGCAAGTTGAGGAAAGGCTAGATGATGATAAAAGTAAAACAGATACACTGAAGGGGACTGAGGAACACTTCAATAAAAATATTCTAGGAACTACTCTTCTCAGTTTGAACTTGAATAACTCAGAGCCTCCCCAAAATCAAGAGCAGCCCCTGACTCAATTGGGTTTGCTGCAAACTAAACTAGAGGAGGCGAAGAAGGAGAATCAGAATTTAAGATCTATGTTAAATCAGATTACTGAACACTATGCAGCTCTTCAAAGTCAGCTATTGTTGAAGGACAAAAGGGAGGATGACATGAAGAAAGCAGAGGAAGCAAAAATCATAGAAGATGGAGCATCTGAGGCTTCTTGCAGGAAAGCCAGAGTGTCCATAAGGGCACGATCAGATTTTTCTTTGATGGGTGATGGGTGTCGATGGAGAAAGTATGGACAAAAGATAGCAAAGGGTAACCCTTGTCCCCGGGCCTACTATCGCTGCAACATGGGAACGGCATGTCCAGTTCGTAAGCAGGTTCAAAGGTGTGCAATGGATGAGAGTGTTTTCATCACAACCTATGAGGGTAATCATAATCATTCACTCCCACCAGAAGCCAGATCCATGGCCAGCACAACATCAGCAGCATTAAACATGTTCCTTTCTGGTTCAACCACTAGTACTTTCCATAGCAGCACTCTATCAAACTCAGGCCTCTTCTCTTCATCATCTACTAGTAATTCCTCTGCCTCCACTACTGCTAGTTTGGCTTCCTTCTATCCATCTCCATCATGTCCCACTTTAACATTGGACTTAACCCACCCCTCTAATAACTACTTGAAACTCCAAAGGCCTATTTCTTCAAACCATTGGCAACCATTTCCTGTTTCATTGCATGGTCACTGTACTACTCGTGAGGGAGGACTGCACTACTTGTCTTCTAAGCTTCCAACCGTGACACCCTCAGAGAAAAACCTTGCCTTGGTGGATGTTATCAGTGCAGCTATAATCAAGGATCCTTCTATTAAGGCAGTGTTAGATGCAGTAGTTTCCTCACTCAGTGGAGACACTACTCAGAACATCACCCAACTTAGTAGGATCGAGTGA 1110 0.4342 MEGEVAMKKWLQVEERLDDDKSKTDTLKGTEEHFNKNILGTTLLSLNLNNSEPPQNQEQPLTQLGLLQTKLEEAKKENQNLRSMLNQITEHYAALQSQLLLKDKREDDMKKAEEAKIIEDGASEASCRKARVSIRARSDFSLMGDGCRWRKYGQKIAKGNPCPRAYYRCNMGTACPVRKQVQRCAMDESVFITTYEGNHNHSLPPEARSMASTTSAALNMFLSGSTTSTFHSSTLSNSGLFSSSSTSNSSASTTASLASFYPSPSCPTLTLDLTHPSNNYLKLQRPISSNHWQPFPVSLHGHCTTREGGLHYLSSKLPTVTPSEKNLALVDVISAAIIKDPSIKAVLDAVVSSLSGDTTQNITQLSRIE. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00533 369 SMART WRKY_cls 143 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00533 369 ProSiteProfiles WRKY domain profile. 138 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00533 369 Gene3D WRKY domain 127 205 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00533 369 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 52 105 IPR044810 GO:0003700
Seca12g00533 369 Coils Coil 64 98 - -
Seca12g00533 369 SUPERFAMILY WRKY DNA-binding domain 136 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00533 369 Pfam WRKY DNA -binding domain 145 201 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00533 Seca-Chr12 4718406 4723398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00533 115 274 WRKY Transcription Factor Family AT4G04450 57.143 8.85e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00533 WRKY 1.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00533 - - gmx:100779314 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03631 6 103576278 103582857 Seca12g00533 12 4718406 4723398 PCT