Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00520 ATGCCATTTCAGCGAGAAGGTGTTAGGTTTCTATTGCAGCATGGATGTCGTGCTCTTTTAGCAGATGAAATGGGACTGGGGAAAACTTTGCAGGCCATTGCTGTAGCTGCATGCGTTCAGGATTCATGGCCTGTTCTCATACTTGCACCATCTTCATTACGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAACATTCCTTCATCAGATATACTTATTGTCTTATCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAATATAGTCTCTTCAAATGCTAAAAGTGGCATTCATCTGGATGGACTATTCAACATCATCTCATATGATTTGGTGCCAAAGCTACAGAATATGCTCATGGCTTCCGACTTTAAGGTTGTAATTGCTGATGAATCACACTTTCTGAAAAATGCTCAGGCAAAGAGGACAACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCATTATCGCGACCAATTGAACTATTTAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAGGAATGTTCATGAGTATGGGAATCGGTATTGCAAGGGTGGAATTTTTGGAGTTTATCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACGGTGATGATTCGAAGGCTTAAAAAAGACGTTCTTTCTCAACTTCCTGTAAAGCGTAGGCAACAAGTATTCCTAGACTTGGCTGAAAAGGACATGAAGCAAATTAATGCTTTATTTCGTGAGTTGGAGAGGGTAAAAGCCAAAATTAAGGCATCTAACTCAAAAGAGGAGGTTGAATCGCTCAAGTTTACTCAAAAGAATCTGATTAACAAGATATATACTGATTCTGCCGAAGCCAAGATTCCATCTGTTCTTGATTATGTTGGGACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAACCAATGATTGATTCAATACATGAGTTTCTTCTTAAGAAAAAAGTGGGTTGCATCCGTATTGATGGAAGTACACCTGCTGCATCAAGGCAACAATTAGTTACAGAGTTTCAGGAAAAAGATGCTATCAAGGCAGCAGTGCTATCAATTAAAGCTGGAGGTGTTGGGTTAACTTTAACTGCTGCCAGCACAGTCATCTTTGCAGAATTGTCTTGGACTCCAGGTGACCTAATTCAGGCTGAAGACCGTGCTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTAGCAAATGACACAGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATTTGGGGCAGATGCTAGATGGCCATGAGAAAACCTTAGAGGTCTCATCTAGTCGGCCAGGGAATAGCCCTGCAAAGCGGAAAACTGTTGAACAGTGTCAACCAGGGAATAGCCCTGCAAAGCAGAAGACTCTTGACCAGTTTGTTAGAAGATGTGACAACATGGATGCGTTGGAACATCAGTCCAATCCCAAACGTCCCCGGCACTGA 1524 0.4134 MPFQREGVRFLLQHGCRALLADEMGLGKTLQAIAVAACVQDSWPVLILAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSNAKSGIHLDGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYRNVHEYGNRYCKGGIFGVYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLAEKDMKQINALFRELERVKAKIKASNSKEEVESLKFTQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGSTPAASRQQLVTEFQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKTLEVSSSRPGNSPAKRKTVEQCQPGNSPAKQKTLDQFVRRCDNMDALEHQSNPKRPRH. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00520 507 Coils Coil 242 272 - -
Seca12g00520 507 CDD SF2_C_SNF 296 420 - -
Seca12g00520 507 SMART helicmild6 326 409 IPR001650 -
Seca12g00520 507 MobiDBLite consensus disorder prediction 450 483 - -
Seca12g00520 507 Pfam SNF2-related domain 13 275 IPR000330 GO:0005524|GO:0140658
Seca12g00520 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 234 IPR027417 -
Seca12g00520 507 MobiDBLite consensus disorder prediction 453 482 - -
Seca12g00520 507 Gene3D - 236 498 IPR027417 -
Seca12g00520 507 Gene3D - 1 229 IPR038718 -
Seca12g00520 507 SMART ultradead3 1 189 IPR014001 -
Seca12g00520 507 FunFam Chromatin remodeling factor18 258 503 - -
Seca12g00520 507 Pfam Helicase conserved C-terminal domain 310 409 IPR001650 -
Seca12g00520 507 FunFam Chromatin remodeling factor18 1 247 - -
Seca12g00520 507 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 454 IPR027417 -
Seca12g00520 507 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 9 181 IPR014001 -
Seca12g00520 507 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 1 499 - -
Seca12g00520 507 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 452 IPR001650 -
Seca12g00520 507 CDD DEXHc_HARP_SMARCAL1 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00520 Seca-Chr12 4644313 4652981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00520 280 429 RAD5 or RAD16-like Gene Family AT1G05120 30.519 4.55e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca12g00520 SNF2_N 4.2e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00520 K14440 - gmx:100778246 900.968