Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00516 ATGGGGGATGAGGTGGTGTTGTTGGATTTCAATGTCAGTATGTTTGGGATGAGAGTGAGAGTTGCACTGGCAGAGAAAGGGATCAAGTATGAGTACAAGGAGGAGGATCTGATGAACACCAAGAGTGCATTGCTTCTGCAAATGAACCCCGTTAACAAGAAAATCCCAGTCCTTATCCATAATGGAGAGCCCATTTGTGAATCCCTCATTATTGTTGAGTATATTGATGAGGTCTGGAAGGATAAAGCTCCCTTGTTGCCCATTGATCCATACCAGAGAGCTCAAGCCAGGTTCTGGGCTGATTTTGTTGATAACAAGGTGCACGAAGTTGCAAAGAAGATATGGACTGGGAAGGTAGATGAACTTGAGACAGAAAAGAAGGAATTACTAGAGAATTTGAAGCAACTGGAGGAGTTTCTTGGGGACAAGCCATACTTTGGGGGTGACACATTTGGGTTTCTTGATGTTGCTTTCATTCCTTTCTATAAATGGTTTTATGCTTATGAGACAGTTGGCAAAATGAAGTTAGACTGCCCAAAACTCATTGCATGGGGAAAGAGATGCTTGCAGAGAGAAAGTGTGTCCAAATTCCTTGCGGACGAAAAGGAGATATATGAGTTTGTTCTGAGCTACAGGAAAATAATTGGAGTGGACCAAGACACCAAAACCAACTGA 675 0.4267 MGDEVVLLDFNVSMFGMRVRVALAEKGIKYEYKEEDLMNTKSALLLQMNPVNKKIPVLIHNGEPICESLIIVEYIDEVWKDKAPLLPIDPYQRAQARFWADFVDNKVHEVAKKIWTGKVDELETEKKELLENLKQLEEFLGDKPYFGGDTFGFLDVAFIPFYKWFYAYETVGKMKLDCPKLIAWGKRCLQRESVSKFLADEKEIYEFVLSYRKIIGVDQDTKTN. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00516 224 Pfam Glutathione S-transferase, N-terminal domain 10 77 IPR004045 -
Seca12g00516 224 Coils Coil 112 139 - -
Seca12g00516 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 10 206 IPR045073 -
Seca12g00516 224 Gene3D Glutaredoxin 1 88 - -
Seca12g00516 224 Gene3D - 89 218 - -
Seca12g00516 224 SFLD Main.3: Omega- and Tau-like 3 218 IPR045073 -
Seca12g00516 224 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Seca12g00516 224 Pfam Glutathione S-transferase, C-terminal domain 126 184 - -
Seca12g00516 224 SUPERFAMILY GST C-terminal domain-like 77 215 IPR036282 -
Seca12g00516 224 CDD GST_N_Tau 5 79 - -
Seca12g00516 224 SFLD Main (cytGST) 3 218 - -
Seca12g00516 224 CDD GST_C_Tau 90 211 IPR045074 GO:0004364|GO:0006749
Seca12g00516 224 FunFam Tau class glutathione S-transferase 1 88 - -
Seca12g00516 224 FunFam Glutathione S-transferase U20 89 218 - -
Seca12g00516 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 83 IPR004045 -
Seca12g00516 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 211 IPR010987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00516 Seca-Chr12 4621453 4622326 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00516 1 218 Glutathione S-transferase Gene Family AT1G17180 61.818 1.04e-97 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00516 K00799 - gmx:100781460 347.821