Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00515 ATGGAAGGGGATATCAGTTTGGATGAAGATGCTACCAGTCTTCAACCAGTTGTAGATCCTGACAGCAAGCAAGATTCAAAGACAAGCAAGGCCAAAGAAGAAACCACCAAAACAGTACCTTTATACAAGCTTTTCTCATTTGCTGATTCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGAGTTGACTTGCTGGATGATCACTGGGGAGAGGCAAGCTGCTAGAATTAGAGGCTTATACCTTCAAACAATTTTGAGGCAAGATGTGAGCTTTTTTGATAAGGAAACTAATACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATACAATTAATGGCAACTTTCTTTGGAGGTTTTGTCATAGCATTCATTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTCTTGTCTTGTCTGGAGCTATGATGAGCATGGTTGCATCCTTCACTGGGGAGAAGCAAGCTATAGCTAAATATAATCAGTCCTTAATTAAAGCTTACAAGACTGTAGTGCAAGAGGCAATAGCTTCTGGTTTGGGATTTGGTTCACTGTCTCTTGGGCAAGCATCTCCAAGTTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCGGCAACTTGATGATATTCGTGGAGATATAGAACTAAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTCATATTCAATGGATTTTCTCTTTCAATACCAAGTGGTGCTACTGCAGCCTTGGTAGGACAAAGTGGGAGTGGGAAATCCACAGTTGTTAGTTTGATAGAGAGATTTTATGATCCACTGGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAACTGAAATGGATCAGACAGAAAATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCCTATGGCAAGGATGGTGCAACAGATGAAGAAATTAGAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTGGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGTGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCTAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCTGAGCTCACCAGGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATGAAAGGGTCAGAACAGAAAGTTGTAAATGACACAGAGAAGCCAGAAAGTATAACACTTTCTGGAAGACAATCAAGTCAAAGATCATTTTCCTTAAGATCTATAAGCCATGAGTCATCTGGAGTTGGAAACAGTGGTCGTCTCTCATTCTCAGCATCATATGGTGTGCCCACAACAGTTGGCATTTTGGAACCTACAAGTGAAGCTCCTCCTTCAACAGCTTCTTCACCACCAGAAGTGCCACTTTATCGCCTGGCTTATTTAAATAAGCCAGAGATTCCAGTCTTACTGATAGGCACTATAGCTGCAGTGGCACATGGAGTGATCTTACCCATTTTTGGGCTCTTACTTTCCAAAATGATAAGTATTTTCTATGAGCCAGCTGATGAACTTCGTGACGATTCAAGGGTTTGGGCATTAGTATTTGTTGGGCTTGCTGTGGCATCTTTACTCATTTTTCCATGTAGATTCTACTTTTTTGGCATTGCTGGTGGTAAGTTGATCAAGAGGATCCGGAAAATGTGTTTTGAGAAATTAGTTCACATGGAAGTGAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTCTCTACTGATGCAGCTTCTATTAGAGCTTTAGTTGGGGATGCACTTGGTTTGCTAGTTGAAAATATTGCTACAGCAATAGCTGGATTGGTAATTGCATTTGTAGCCAGCTGGCAGCTTGCTCTTGTAATCCTTGCTTTGGTGCCTCTATTAGGACTAAATGGATATTTGCAAGTGAAGTTCTTGAAAGGGTTCAGCGCTGATTCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAATTATATCAGGAAAAATGTGAGGGACCAATTAAGACAGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTTTGGTTCATCATTCTTTGTGCTGTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGAAAATCATCATTCTCAGATGTTTTCCGTGTCTTTTTTGCTCTTAGCATGGCAGCTATAGGAATGTCTCAATCTGGGACCTTGGTTCCTGATTCAACTAAAGCAAAAAGTGCTGCTGCTTCCATATTTGCTATTCTTGATCGGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGTTTAAGCATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTAACCATTCATAGTGGCAAGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTAATACAAAGATTTTATAATCCAGACTCAGGTAACATTACACTGGAAGGAATAGAAATCCAAAGGCTGCAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTAAGCCAAGAGCCTGTGTTGTTTAATGAAACCATCAGAGCCAACATTGCATATGGAAAAGGAGGAGATGCAACAGAGGCAGAAATTATAGCTGCAGCAGAACTAGCAAATGCTCACAAGTTCATTAGTAGTTTGCAAAAGGGTTATGACACAATAGTAGGGGAACGAGGAGTTCAATTATCTGGGGGACAGAAGCAGCGTGTGGCAATTGCAAGAGCTATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACTAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTAGACCGAACCACAATAGTTGTGGCTCATAGATTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATGGTGTCATTGCAGAAAAAGAGGTGGCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAAAATAAGAGCCTTATACCTCAAAGCAATTCTGAGGCAAGATATCAGCTTCTTTGACAAGGAAATGAAGAGTGGTGAGGTTGTTGGAAGGATGTCAGGTGACACAGTTCTTATTCAAGATGCCATGGGGGAGAAGGGACTTGACACGATGGTTGGTGAGCATGGGACCCAGCTTTCTGGAGGTCAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCAACAATTCTACTCCTTGATGAAGCTACAAGTGCCCTTGATGCAGAGTCTGAAAGAGTGGTACAAGAGACACTAGACAGAATTATGATTAACCAAACAACTGTCATCGTAGCCCACCGCCTAAGCACAATAAGGAATGCTGATATCATTGCTGTAATTCACCAAGGAAAAGTAGTAGAAAAAGGTACACATGCTGAGCTCACTAAAGATCCTGATGGAGCTTATAGCCAGCTCATTAGGTTGCAAGAAATTAAAAGGGAATCAGAACAGCATGGTGCAAATGACTCGGCCAAGCTAGAGTCTTTAAGCCGGGGATCATCTGGAATTGGAAACAGCAGTCGTCACTCATTCAGAATATCAAACGCTATGCCATCAGAAGGAGGGCCTGAAGCTCTCCCTTCAGGAGCATCACATAAACCTCAAGATGCCCCATTTCTCCGCCTTGGCTGGTTTGATAAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTGTCAACTGACGCTGCTTCTATTCGAACTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAGATATTTCTACAGTAATTACAGCCTTGGTAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCGTTCTTGTTTTGCTACCTCTACTATTAGTAAATGGACATGTGCAAATCAAGTCCATGCAAGGTTTCAGCACAGATGCAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCGAATGATGCAGTGGGGAATATCAGAACAGTTGCCGCTTTCTGTGCTGAAGAGAAGGTATTTTTCTCTCTTACAATGGCAGCTATAGCATTATCTCAATCTGGCTTCATGATCCCAGGGGCAAGTAAGGCAAGAAGTTCTGCTGCTTCTATATTTGCTATTCTTGATCAGAAATCAAAAATAGATTCCAGTGATGAGTCTGGAATGACATTGCAAGATGTGAAGGGAGAAATTGAGTTCCACCATGTTGCTTTCAAGTATCCAACCAGGCCTAATGTTCCTATATTCAGAGATCTTTCCTTGACCATTCATTCAGGACAGACAGTTGCTCTAGTAGGTGAAAGTGGAAGTGGAAAGTCAACAGTGATCTCATTGTTGCAAAGATTTTATGACCCAGATTCAGGTCAGATTAAATTGGATGGGACAGAAATCCAAAAGCTACAACTTAAATGGTTTAGGCAGCAGATGGGCCTGGTAAGCCAGGAGCCAGTGTTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGAGGAGATGCTACAGAGGCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACTGTAGTAGGGGAGAGAGGAATTCAACTATCAGGAGGGCAGAAGCAGAGGGTGGCAATTGCAAGAGCCATAGTTAAGAGTCCAAAAATATTACTACTAGATGAAGCCACTAGTGCACTTGATGCTGAATCAGAAAAAGTGGTCCAGGATGCACTTGACAGAGTGAGGGTGGATAGAACCACAATTGTGGTGGCCCACAGGTTATCCACCATAAAGGGTGCAAGTTCAATTGCAGTGGTTAAAAATGGGGTCATTGCAGAGAAAGGGAAGCATGACACTTTGCTCAACAAGGGTGGTACCTATGCTTCCTTAGTAGCACTGCACACAAGTGCTTCTTCATCTTAG 5358 0.4207 MEGDISLDEDATSLQPVVDPDSKQDSKTSKAKEETTKTVPLYKLFSFADSLDHLLMFVGTVGAIELTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIQLMATFFGGFVIAFIKGWLLTVVMLSCIPLLVLSGAMMSMVASFTGEKQAIAKYNQSLIKAYKTVVQEAIASGLGFGSLSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGRQLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGATAALVGQSGSGKSTVVSLIERFYDPLAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVEKGSHAELTRDPDGAYSQLIRLQEMKGSEQKVVNDTEKPESITLSGRQSSQRSFSLRSISHESSGVGNSGRLSFSASYGVPTTVGILEPTSEAPPSTASSPPEVPLYRLAYLNKPEIPVLLIGTIAAVAHGVILPIFGLLLSKMISIFYEPADELRDDSRVWALVFVGLAVASLLIFPCRFYFFGIAGGKLIKRIRKMCFEKLVHMEVSWFDEAEHSSGALGARLSTDAASIRALVGDALGLLVENIATAIAGLVIAFVASWQLALVILALVPLLGLNGYLQVKFLKGFSADSKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKCEGPIKTGIRRGIISGIGFGSSFFVLYAVYACSFYAGARLVEDGKSSFSDVFRVFFALSMAAIGMSQSGTLVPDSTKAKSAAASIFAILDRKSQIDPSDESGMTLEEVKGEIEFKHVSFKYPTRPDVQIFRDLCLTIHSGKTVALVGESGSGKSTVISLIQRFYNPDSGNITLEGIEIQRLQVKWLRQQMGLVSQEPVLFNETIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNGVIAEKEVACWVITGERQAAKIRALYLKAILRQDISFFDKEMKSGEVVGRMSGDTVLIQDAMGEKGLDTMVGEHGTQLSGGQKQRIAIARAILKDPTILLLDEATSALDAESERVVQETLDRIMINQTTVIVAHRLSTIRNADIIAVIHQGKVVEKGTHAELTKDPDGAYSQLIRLQEIKRESEQHGANDSAKLESLSRGSSGIGNSSRHSFRISNAMPSEGGPEALPSGASHKPQDAPFLRLGWFDKAEHSSGALGARLSTDAASIRTLVGDALGLLVQDISTVITALVIAFEANWQLSLIVLVLLPLLLVNGHVQIKSMQGFSTDAKKLYEEASQVANDAVGNIRTVAAFCAEEKVFFSLTMAAIALSQSGFMIPGASKARSSAASIFAILDQKSKIDSSDESGMTLQDVKGEIEFHHVAFKYPTRPNVPIFRDLSLTIHSGQTVALVGESGSGKSTVISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESEKVVQDALDRVRVDRTTIVVAHRLSTIKGASSIAVVKNGVIAEKGKHDTLLNKGGTYASLVALHTSASSS. 1786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00515 1785 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1135 1189 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 Pfam ABC transporter 933 1081 IPR003439 GO:0005524
Seca12g00515 1785 Pfam ABC transporter 1165 1231 IPR003439 GO:0005524
Seca12g00515 1785 PANTHER ABC TRANSPORTER B FAMILY 1368 1483 IPR039421 -
Seca12g00515 1785 SMART AAA_5 283 469 IPR003593 GO:0016887
Seca12g00515 1785 SMART AAA_5 940 1133 IPR003593 GO:0016887
Seca12g00515 1785 SMART AAA_5 1568 1761 IPR003593 GO:0016887
Seca12g00515 1785 SMART AAA_5 1166 1283 IPR003593 GO:0016887
Seca12g00515 1785 FunFam ABC transporter B family member 1 903 1144 - -
Seca12g00515 1785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1130 IPR027417 -
Seca12g00515 1785 FunFam ABC transporter B family member 1 246 495 - -
Seca12g00515 1785 ProSitePatterns ABC transporters family signature. 1053 1067 IPR017871 GO:0005524|GO:0016887
Seca12g00515 1785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 494 IPR027417 -
Seca12g00515 1785 Gene3D - 283 503 IPR027417 -
Seca12g00515 1785 Gene3D - 1145 1321 IPR027417 -
Seca12g00515 1785 ProSitePatterns ABC transporters family signature. 1681 1695 IPR017871 GO:0005524|GO:0016887
Seca12g00515 1785 CDD ABC_6TM_Pgp_ABCB1_D1_like 54 209 - -
Seca12g00515 1785 ProSitePatterns ABC transporters family signature. 395 409 IPR017871 GO:0005524|GO:0016887
Seca12g00515 1785 Gene3D - 1531 1784 IPR027417 -
Seca12g00515 1785 Gene3D - 903 1144 IPR027417 -
Seca12g00515 1785 FunFam Uncharacterized protein 1502 1531 - -
Seca12g00515 1785 Pfam ABC transporter 275 423 IPR003439 GO:0005524
Seca12g00515 1785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1530 1778 IPR027417 -
Seca12g00515 1785 FunFam Uncharacterized protein 877 903 - -
Seca12g00515 1785 MobiDBLite consensus disorder prediction 508 540 - -
Seca12g00515 1785 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1142 1300 IPR003439 GO:0005524
Seca12g00515 1785 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1366 1484 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 ProSitePatterns ABC transporters family signature. 1203 1217 IPR017871 GO:0005524|GO:0016887
Seca12g00515 1785 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 913 1150 IPR003439 GO:0005524
Seca12g00515 1785 CDD ABC_MTABC3_MDL1_MDL2 1541 1776 - -
Seca12g00515 1785 FunFam ABC transporter B family member 1 1531 1780 - -
Seca12g00515 1785 SUPERFAMILY ABC transporter transmembrane region 56 238 IPR036640 GO:0005524|GO:0016020
Seca12g00515 1785 MobiDBLite consensus disorder prediction 1307 1359 - -
Seca12g00515 1785 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1541 1778 IPR003439 GO:0005524
Seca12g00515 1785 CDD ABC_MTABC3_MDL1_MDL2 256 494 - -
Seca12g00515 1785 MobiDBLite consensus disorder prediction 498 540 - -
Seca12g00515 1785 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 592 878 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 MobiDBLite consensus disorder prediction 1 32 - -
Seca12g00515 1785 Gene3D ABC transporter type 1, transmembrane domain 1365 1529 IPR036640 GO:0005524|GO:0016020
Seca12g00515 1785 Gene3D ABC transporter type 1, transmembrane domain 554 901 IPR036640 GO:0005524|GO:0016020
Seca12g00515 1785 Pfam ABC transporter transmembrane region 56 166 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 Pfam ABC transporter transmembrane region 591 861 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 Pfam ABC transporter transmembrane region 1127 1190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 Pfam ABC transporter transmembrane region 1367 1483 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 SUPERFAMILY ABC transporter transmembrane region 579 897 IPR036640 GO:0005524|GO:0016020
Seca12g00515 1785 CDD ABC_6TM_Pgp_ABCB1_D2_like 581 896 - -
Seca12g00515 1785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1189 1302 IPR027417 -
Seca12g00515 1785 SUPERFAMILY ABC transporter transmembrane region 1114 1189 IPR036640 GO:0005524|GO:0016020
Seca12g00515 1785 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 256 492 IPR003439 GO:0005524
Seca12g00515 1785 Pfam ABC transporter 1560 1709 IPR003439 GO:0005524
Seca12g00515 1785 SUPERFAMILY ABC transporter transmembrane region 1366 1521 IPR036640 GO:0005524|GO:0016020
Seca12g00515 1785 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 54 181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00515 1785 Gene3D ABC transporter type 1, transmembrane domain 11 282 IPR036640 GO:0005524|GO:0016020
Seca12g00515 1785 FunFam ABC transporter B family member 1 571 876 - -
Seca12g00515 1785 CDD ABC_MTABC3_MDL1_MDL2 913 1131 - -
Seca12g00515 1785 MobiDBLite consensus disorder prediction 1315 1340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00515 Seca-Chr12 4601462 4616032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00515 64 500 Calmodulin-binding Proteins AT2G36910 38.943 1.50e-90 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00515 K05658 - gmx:100800293 1714.89