Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00514 ATGAACCTGGAATGCTTTTTCTGCAGTTGCTTTCCATTGGTAGAAATGGAAAGGGATATCAGTTTGGATGGAGATGCTAAGAGTCTTCAACCAGTTGTAGATCCTGACAGCAAGCAAGATTCAAAGACAAGCAAGGCCAAAGATGAAACCACCAAAACAGTACCTTTATACAAGCTTTTCTCATTTGCTGATTCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGTGCTATTGGGAATGGAATCTCCATGCCCTTGATGACCTTAATATTTGGAAATATGATCAATGCATTTGGAGGATCCACAAACACCAAAGAAGTTGTTGATGAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCTGCGGGTACTTTTGTTGCATCACTATTGCAGTTGACTTGCTGGATGATCACTGGGGAGAGGCAAGCTGCTAGAATTAGAGGCTTATACCTTCAAACAATTTTGAGGCAAGATGTGAGCTTTTTTGATAAGGAAACTAATACTGGAGAGGTTATTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGTGAGAAGGTGGGACAGTTCATAGAGTTAGTGACAACTTTCTTTGGAGGCTTTGTCATGGCCTTTATCAGGGGATGGCTTCTAACTATTGTTATGTTATCTTGTATTCCACTTCTTGTCCTGTTTGGTGCTATGATGAGCATGGTTATTGCAAAAGCATCATCTAGTGGACAAGCAGCTTCATCTACAGCGGCAAGTGTAGTTGAGCAGACAATAGGTTCTATCAGAACTGTTGCATCATTCACTGGGGAGAAGCAAGCTATAGCTAAATATAACCAGTCATTAATCAAAGCTTACAACACTGGAGTGCAAGCGGCACTAGCTTCTGGTTTGGGGTTTGGTTCACTTTTTTTTGTTGTTATGTGCAGTTATGGTTTAGCTGTATGGTTTGGTGGGAAAATGATAATAGAGAAAGGATATACAGGAGGGGAGGTTGTGAATGTAATTTTTGCTGTATTGATTGGCTCCACGTCTCTTGGGCAGGCATCTCCAAGCTTGAGAGCTTTTGCTGCAGGACAAGCTGCAGCCTTCAAGATGTTTGAAACGATTAAAAGGAAGCCAGAAATTGATGCTTATGGCACTACTGGTTGGCAACTTGATGATATTCATGGAGATATAGAACTAAGGGAGGTTTGCTTTAGTTATCCTACAAGACTAGATGAACTGATACTCAATGGATTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCCTTGGTTGGGCAAAGTGGGAGTGGGAAATCCACAATTGTTAGTTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAATTCTCATTGATGGCATAAACCTCAAAGAATTTCAACTGAAATGGATTAGACAGAAGATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCTTATGGAAAGGATGGTGCAACTGATGAAGAAATCAGATCTGCAGCAGAGCTTGCTAATGCTACCAAATTTATAGATATACTTCCTCAGGGACTAGACACAATGGTTGGTGAACATGGAACTCAGCTCTCTGGTGGTCAAAAGCAAAGAGTTGCAATAGCAAGAGCAATCCTGAGAGATCCAAGAATCCTACTTTTGGATGAAGCTACAAGTTCCCTTGATGCTGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAGTAATGATAAACCGAACAACTGCCATTGTAGCCCACCGGTTAAGTACAATAATGAATGTTGATGCCATTGTTGTTATTCAGCAAGGAAAAATAGTTGAAAAAGGTTCACATGTTGAGCTCACCAGGGATCCTAATGGAGCCTATAGCCAGCTCATTAGGCTGCAAGAAATTAAAAGGCCAAAACAGAATGTTGCAAATGACACAGAGAAGACAGAAAGTATATTGCATCATGGAACTCAATCAAGTCAAATATCTCCCCTCTTGCAATCTACAATTACAAGCCAAGGGTCAACTGGAGTTGGAAACAGTACAACAACTAGCTTTTTGGAACCTATAAATGGAGGACCTCAAGCTCATTCTTCAACAGTTTCTTTACCACCAGAAGTGCCACTTTATCGCCTAGCTTATTTGAACAAGCCAGAGATTCCAATCTTATTGGTGGGGACTATAGCTGCAGTGGTACATGGAGTGATCTTACCCATTTTTGGGCTATTGCTTTCCAACATGACAAGTATTTTCTATGAGCCAGATGATGAACTTTATAAGGATGCAAAAGTTTGGGCATTAGTAATTTCTGTGTTTGGTGGGGCATCATTCTTCATTTTTTCATGTAGATTCTACCTTTTTGGCATTGCTGGTGGTAAGTTGATCAAAAGGATCCGGAAAATGTGTTTTGAGAAAGTAGTTCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGAACTTGGAGCAAGGCTTTCTACTGATGCAGCTTCTATTCGAGCATTGGTTGGGGATGCACTTGGTTTGCTGGTTCAGAATATTGCTACAGTAGTAGCTGGCTTGGTAATTGCTTTTGAAGCTAACTGGCAGCTTGCTCTCATAATACTTGCTTTGGTGCCTCTATTAGCACTAAATGGATATGTGCAATTCAAGTACTTGAAAGGGTTCAGTGCAGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCCAATGATGCTGTAGGAAGTATAAGAACAGTTGCATCGTTCTGTGCTGAAGAGAAGGTAATGGAATTATACAAGGAAAAATGTAAGGGACCAATTAAAACTGGCATAAGGCGAGGGATAATAAGTGGAATTGGTTTTGGGTTATCATTCTTTGTGTTGTATGCAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGAAAATCAACATTCTCTGATGTTTTACGTGTCTTTTTTGCTCTCAGTATGGCAGCTATAGGAGTCTCTCAATCTGGGTCCTTGGTTTCTGATTCAACAAAAGCAAAAAATGCTGCTGCTTCCATATTTGCTATTCTTGATCAGAAGTCACAAATAGACCCTAGTGATGAATCTGGAATAACATTGAAAGAAGTCAAGGGAGAAATTGAGTTTAACCATGTCAATTTCAAGTATCCTACTAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTGACCATTCATAGTGGCAAGACAATTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACTGTGATCTCATTACTACAGAGATTTTATGACCCAGACTCAGGTTGCATTACACTAGATGGAATAGAAATCCAAAGGCTTCAAGTGAAATGGCTAAGACAACAAATGGGCCTGGTAAGCCAAGAGCCTGTGTTGTTTAATGAGACCATCAGAGCCAATATTGCATATGGAAAAGGAGGAGATGCAACAGAAGCAGAAATTATAGCTGCAACAGAACTAGCAAATGCTCACCAGTTCATTAGTAGTTTACAGAAGGGTTATGACACAATAGTAGGGGAACGAGGAGTTCAATTATCTGGGGGACAGAAGCAACGTGTGGCAATTGCACGAGCTATAGTTAAGAATCCAAAAATATTACTGCTAGATGAAGCCACAAGTGCACTTGATGCTGTGTCTGAAAAAGTGGTTCAGGATGCACTTGACCATGTTATGGTGGACCGAACCACAATTGTAGTAGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCGGTACTTAAGAATGGTGTCATAGTAGAGAAGGGAAAACATGAGGAATTAGTCAATAAAGGAGGTCATTATGCTTCCTTAGTAGCTTTGCACATAAGTTCTTCATAA 3861 0.403 MNLECFFCSCFPLVEMERDISLDGDAKSLQPVVDPDSKQDSKTSKAKDETTKTVPLYKLFSFADSLDHLLMFVGTVGAIGNGISMPLMTLIFGNMINAFGGSTNTKEVVDEVSKVSLKFVYLAAGTFVASLLQLTCWMITGERQAARIRGLYLQTILRQDVSFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGQFIELVTTFFGGFVMAFIRGWLLTIVMLSCIPLLVLFGAMMSMVIAKASSSGQAASSTAASVVEQTIGSIRTVASFTGEKQAIAKYNQSLIKAYNTGVQAALASGLGFGSLFFVVMCSYGLAVWFGGKMIIEKGYTGGEVVNVIFAVLIGSTSLGQASPSLRAFAAGQAAAFKMFETIKRKPEIDAYGTTGWQLDDIHGDIELREVCFSYPTRLDELILNGFSLSIPSGTTAALVGQSGSGKSTIVSLIERFYDPQAGEILIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIRSAAELANATKFIDILPQGLDTMVGEHGTQLSGGQKQRVAIARAILRDPRILLLDEATSSLDAESERIVQEALDRVMINRTTAIVAHRLSTIMNVDAIVVIQQGKIVEKGSHVELTRDPNGAYSQLIRLQEIKRPKQNVANDTEKTESILHHGTQSSQISPLLQSTITSQGSTGVGNSTTTSFLEPINGGPQAHSSTVSLPPEVPLYRLAYLNKPEIPILLVGTIAAVVHGVILPIFGLLLSNMTSIFYEPDDELYKDAKVWALVISVFGGASFFIFSCRFYLFGIAGGKLIKRIRKMCFEKVVHMEVSWFDEAEHSSGELGARLSTDAASIRALVGDALGLLVQNIATVVAGLVIAFEANWQLALIILALVPLLALNGYVQFKYLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYKEKCKGPIKTGIRRGIISGIGFGLSFFVLYAVYACSFYAGARLVEDGKSTFSDVLRVFFALSMAAIGVSQSGSLVSDSTKAKNAAASIFAILDQKSQIDPSDESGITLKEVKGEIEFNHVNFKYPTRPDVQIFRDLCLTIHSGKTIALVGESGSGKSTVISLLQRFYDPDSGCITLDGIEIQRLQVKWLRQQMGLVSQEPVLFNETIRANIAYGKGGDATEAEIIAATELANAHQFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAVSEKVVQDALDHVMVDRTTIVVAHRLSTIKGADLIAVLKNGVIVEKGKHEELVNKGGHYASLVALHISSS. 1287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00514 1286 CDD ABC_MTABC3_MDL1_MDL2 1044 1279 - -
Seca12g00514 1286 FunFam ABC transporter B family member 1 384 633 - -
Seca12g00514 1286 Pfam ABC transporter transmembrane region 71 344 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00514 1286 Pfam ABC transporter transmembrane region 722 992 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00514 1286 SUPERFAMILY ABC transporter transmembrane region 58 376 IPR036640 GO:0005524|GO:0016020
Seca12g00514 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 394 630 IPR003439 GO:0005524
Seca12g00514 1286 Pfam ABC transporter 1064 1212 IPR003439 GO:0005524
Seca12g00514 1286 SMART AAA_5 421 601 IPR003593 GO:0016887
Seca12g00514 1286 SMART AAA_5 1071 1264 IPR003593 GO:0016887
Seca12g00514 1286 FunFam ABC transporter B family member 1 703 1010 - -
Seca12g00514 1286 CDD ABC_6TM_Pgp_ABCB1_D2_like 712 1027 - -
Seca12g00514 1286 Gene3D - 1042 1281 IPR027417 -
Seca12g00514 1286 Pfam ABC transporter 412 561 IPR003439 GO:0005524
Seca12g00514 1286 FunFam ABC transporter B family member 9 58 389 - -
Seca12g00514 1286 Gene3D - 416 641 IPR027417 -
Seca12g00514 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 723 1009 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00514 1286 Gene3D ABC transporter type 1, transmembrane domain 694 842 IPR036640 GO:0005524|GO:0016020
Seca12g00514 1286 Gene3D ABC transporter type 1, transmembrane domain 938 1041 IPR036640 GO:0005524|GO:0016020
Seca12g00514 1286 Gene3D ABC transporter type 1, transmembrane domain 71 411 IPR036640 GO:0005524|GO:0016020
Seca12g00514 1286 ProSitePatterns ABC transporters family signature. 533 547 IPR017871 GO:0005524|GO:0016887
Seca12g00514 1286 PANTHER ABC TRANSPORTER B FAMILY 35 635 IPR039421 -
Seca12g00514 1286 CDD ABC_MTABC3_MDL1_MDL2 394 632 - -
Seca12g00514 1286 SUPERFAMILY ABC transporter transmembrane region 710 1028 IPR036640 GO:0005524|GO:0016020
Seca12g00514 1286 ProSitePatterns ABC transporters family signature. 1184 1198 IPR017871 GO:0005524|GO:0016887
Seca12g00514 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1033 1281 IPR027417 -
Seca12g00514 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00514 1286 FunFam ABC transporter B family member 1 1034 1283 - -
Seca12g00514 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 386 632 IPR027417 -
Seca12g00514 1286 CDD ABC_6TM_Pgp_ABCB1_D1_like 71 354 - -
Seca12g00514 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1044 1281 IPR003439 GO:0005524
Seca12g00514 1286 FunFam ABC transporter B family member 9 1011 1033 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00514 Seca-Chr12 4589135 4594539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00514 45 1282 Calmodulin-binding Proteins AT2G36910 43.600 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00514 K05658 - gmx:100800293 1969.9