Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00513 ATGGCTGGGGATATCAGTTTGGATGGAGATGTTGCGAGTCTTCAACCAGATGTAGATCCTGAGAGCAACCAAGATTCAAAGAAGAGCAAGTCAAAAAATGAAGCCACTAACTCAGTACCCTCATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCATTTATTGATGTTTGTGGGGACTGTGGGAGCTACTGGGAATGGAATCTCCATGCCCTTGATGCTTTTAATATTTGGAAATATGATTAATGCATTTGGATCCAAAAACTCCAAAGAAGTTGTTGATGAAGTTTCCAAGGTATCTCTGAAATTTGTATACTTGGCTCTGGGTACCTTTGTTGCAGCACTTTTTCGTGAGTACATTTTATTCTCTGTTAGCTCATACAATCTAACCATTAGTTTGGCTCATTATGACCCAAAAAGAATCCCTGTTTGCTATGTATCAGAGTTGACTTGCTGGATGATCACTGGGGAGAGACAGGCTTCAAGAATTAGAGGCTTATATCTTCAAACAATTTTGAGGCAAGATGTGACTTTCTTTGATAAGGAAACTAGTACTGGAGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGCGAGAAGGTGGGACAATTCATACAGTTTCTGGCAACTTTCTTCGGAGGTTTTATCATAGCATTCATTAAGGGATGGCTTCTAACTGTTGTCATGCTATCTTGTATTCCACTTCTTGTCTTGTCTGGTGCTATGTTGAGCTTGTCTATTACAAAAGCATCAGCCAAGGGACAAGTAGCTTATTCTACCGCTGCAAGTGTAGTAGAGCAGACAATAGGTTCTATCCGAACTGTTGCATCATTCACTGGGGAGAAGCGAGCTTTAACTAAATATAATCAGTCCTTGATCAAAGCTTACAAGACTGGAGTGCAAGAGGCGCTAGCTTCTGGTTTGGGGTTCAGTGCAGTTTTTTTTGTTTTTTACGCCAGTTTTGGTTTGGCTGTATGGTTTGGAGCAAAACTGATAATAGAGAAAGGATATAATGGAGGGGATGTTGTGACTATAATTTTTTCTGTATTGCTTGGTTCCATGTCTCTTGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACAATTAAAAGGAAGCCAGAAATTGATGCTTATGACACTACTGGTCTGAAACTTGATGATATTCGTGGAGATATAGAACTAAGGGAGGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTCATATTCAATGGCTTTTCTCTTTCAATACCAAGTGGCACTACTGCAGCCTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGTTAGCTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGTTCTCATCGATGGTATCAACCTCAAAAAATTTCAACTGAAATGGATCAGACAGAAGATAGGCCTAGTTAGCCAGGAACCAGTTCTCTTTACTTGTAGCATTAAAGAAAATATTGCCTATGGCAAGGATGGTGCAACTGATGAAGAAATCAAAGCTGCAGCAGAACTTGCTAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTGGACACAATGGTTGGTGAGCATGGAACTCAGCTCTCTGGTGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTTTGAAAGACCCTAGAATCCTACTTCTGGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTACAAGAGGCATTGGACAGAATAATGATAAACCGAACAACTGTCATTGTAGCCCACCGCTTAAGTACTATAAGGAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTTGAAAAAGGTTCACATGCTGAGCTCACCAGGGATCCTGATGGAGCCTATAGCCAGCTCATTAGACTGCAAGAAATGAAGGGGTCAGAACAGAATGTTGCAAATGACACAGACAAGCCAGAAAGTATAATACATTCTGGAAGACAATCAAGTCAAAGATCTTTTTCCTTACGATCTATAAGCCGAGGTTCATCTGGAGTTGGAAACAGTAGTCGTCACTCATTCTCAGCATCATATGTTGTACCAACAACAGGTGGAGAACTTGAAGCTCCTCCATCAACAGCTCCTTCACCACCACCAGAAGTGTCACTTTATCGCTTGGCTTCTTTAAACAAGCCTGAGATTCTAGTCTTACTAATGGGGACTATAGCTGCAGTATTACATGGAGTAATAACACCAATTTTTGGGCTCTTACTTTCCAAAATGATAAGTATTTTCTATGAGCCTGCACATGAGCTTCGTCATGATTCAAAAGTTTGGGCAATAGTATTTGTTGCGCTTGGTGTAGCGGCATTACTCATTATTCCATGTAGATTCTACTTTTTTGGCGTTGCTGGTGGTAAATTGATTAAAAGGATCAGGAACATGTGTTTCGAGAAAGTAGTTCACATGGAAGTGAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGCACTTGGAGCAAGGCTTTCTACTGATGCAGCTTCTATTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTAGTTCAAAACATTGCTACAGCAATAGCTGGCTTGGTAATTGCTTTTGAAGCTAGCTGGCAGCTAGCTTTTATAATCCTTGCTTTGGCTCCTCTATTAGGACTAAATGGATATTTACAATTAAAGCTCTTGAAAGGGTTCAGCGCAGATGCAAAGAAAATGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATAAGAACAGTTGCTTCTTTCTGTGCTGAAGAGAAGGTGATGGAGCTATACCAGGAAAAATTTTATGCATGCAGTTTTTATGCTGGAGCTCGTCTTGTAGAGGATGGAAAAACAACAATGACAGATGTTTTCCGTGTCTTTTTTGCTCTGAGCATGGCAGCTATGGGAATCTCTCATTCTGGGTCCTTGGTCCCTGATTCATCAAATGCAAAAGGTGCTGCTGCTTCCATATTTGCTATTCTTGATAGAAAGTCACTAATAGACCCCAGTGATGAATCTGGAATGACATTGGAAGAAGTCAAGGGAGAAATTGAGCTTAAACATGTCAGTTTCAAGTATCCTACCAGACCTGATGTTCAAATATTCAGAGATCTTTGCTTAACCATTCATAGTGGCAGGACAGTTGCATTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTGATCTCATTATTACAAAGATTTTATGACCCAGACTCAGGTCACATTACACTGGATGGAAAAGAAATTCAAAGGCTACAAGTGAAATGGCTAAGACAACAGATGGGCCTGGTAAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGAAGGAGATGCAACAGAAGCAGAAATTATAGCTGCAGCAGAACTGGCAAATGCTCACCAGTTCATTAGTAGTCTACAAAAGGGTTATGACACAATAGTAGGGGAGCGAGGAGTTCAATTATCTGGGGGACAGAAGCAACGAGTGGCAATTGCAAGAGCTATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAAAGTGGTTCAGGATGCACTTGACCGTGTTATGGTGGACCGAACCACAATAGTAGTGGCTCATAGGTTATCCACTATTAAGGGTGCAGATTTAATTGCAGTAGTTAAGAATAGGGTCATAGCAGAGAAGGGAAAGCATGAAGCATTACTCCATAAGGGAGGTCACTATGCTTCCTTAGTAGCGTTGCACACTAGTGCTTCTTCATTGTAG 3840 0.412 MAGDISLDGDVASLQPDVDPESNQDSKKSKSKNEATNSVPSYKLFSFADPLDHLLMFVGTVGATGNGISMPLMLLIFGNMINAFGSKNSKEVVDEVSKVSLKFVYLALGTFVAALFREYILFSVSSYNLTISLAHYDPKRIPVCYVSELTCWMITGERQASRIRGLYLQTILRQDVTFFDKETSTGEVVGRMSGDTVLIQDAMGEKVGQFIQFLATFFGGFIIAFIKGWLLTVVMLSCIPLLVLSGAMLSLSITKASAKGQVAYSTAASVVEQTIGSIRTVASFTGEKRALTKYNQSLIKAYKTGVQEALASGLGFSAVFFVFYASFGLAVWFGAKLIIEKGYNGGDVVTIIFSVLLGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGLKLDDIRGDIELREVCFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKKFQLKWIRQKIGLVSQEPVLFTCSIKENIAYGKDGATDEEIKAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTVIVAHRLSTIRNADTIAVIHQGKIVEKGSHAELTRDPDGAYSQLIRLQEMKGSEQNVANDTDKPESIIHSGRQSSQRSFSLRSISRGSSGVGNSSRHSFSASYVVPTTGGELEAPPSTAPSPPPEVSLYRLASLNKPEILVLLMGTIAAVLHGVITPIFGLLLSKMISIFYEPAHELRHDSKVWAIVFVALGVAALLIIPCRFYFFGVAGGKLIKRIRNMCFEKVVHMEVSWFDEAEHSSGALGARLSTDAASIRALVGDALGLLVQNIATAIAGLVIAFEASWQLAFIILALAPLLGLNGYLQLKLLKGFSADAKKMYEEASQVANDAVGSIRTVASFCAEEKVMELYQEKFYACSFYAGARLVEDGKTTMTDVFRVFFALSMAAMGISHSGSLVPDSSNAKGAAASIFAILDRKSLIDPSDESGMTLEEVKGEIELKHVSFKYPTRPDVQIFRDLCLTIHSGRTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGKEIQRLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKEGDATEAEIIAAAELANAHQFISSLQKGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGADLIAVVKNRVIAEKGKHEALLHKGGHYASLVALHTSASSL. 1280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00513 1279 Pfam ABC transporter 428 576 IPR003439 GO:0005524
Seca12g00513 1279 CDD ABC_MTABC3_MDL1_MDL2 409 647 - -
Seca12g00513 1279 FunFam ABC transporter B family member 9 1002 1024 - -
Seca12g00513 1279 ProSitePatterns ABC transporters family signature. 1175 1189 IPR017871 GO:0005524|GO:0016887
Seca12g00513 1279 FunFam ABC transporter B family member 1 399 648 - -
Seca12g00513 1279 ProSitePatterns ABC transporters family signature. 548 562 IPR017871 GO:0005524|GO:0016887
Seca12g00513 1279 SUPERFAMILY ABC transporter transmembrane region 143 393 IPR036640 GO:0005524|GO:0016020
Seca12g00513 1279 Pfam ABC transporter transmembrane region 149 360 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00513 1279 Pfam ABC transporter transmembrane region 741 951 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00513 1279 CDD ABC_6TM_Pgp_ABCB1_D1_like 56 370 - -
Seca12g00513 1279 PANTHER ABC TRANSPORTER B FAMILY 21 650 IPR039421 -
Seca12g00513 1279 Gene3D - 1025 1274 IPR027417 -
Seca12g00513 1279 Gene3D - 399 648 IPR027417 -
Seca12g00513 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1035 1272 IPR003439 GO:0005524
Seca12g00513 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 952 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00513 1279 Gene3D ABC transporter type 1, transmembrane domain 723 951 IPR036640 GO:0005524|GO:0016020
Seca12g00513 1279 Gene3D ABC transporter type 1, transmembrane domain 952 1275 IPR036640 GO:0005524|GO:0016020
Seca12g00513 1279 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 409 645 IPR003439 GO:0005524
Seca12g00513 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1024 1272 IPR027417 -
Seca12g00513 1279 FunFam ATP-binding cassette subfamily B member 11 43 402 - -
Seca12g00513 1279 CDD ABC_6TM_Pgp_ABCB1_D2_like 731 1018 - -
Seca12g00513 1279 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 57 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g00513 1279 FunFam ABC transporter B family member 1 721 953 - -
Seca12g00513 1279 Pfam ABC transporter 1055 1203 IPR003439 GO:0005524
Seca12g00513 1279 SMART AAA_5 1062 1255 IPR003593 GO:0016887
Seca12g00513 1279 SMART AAA_5 436 622 IPR003593 GO:0016887
Seca12g00513 1279 Gene3D ABC transporter type 1, transmembrane domain 43 655 IPR036640 GO:0005524|GO:0016020
Seca12g00513 1279 FunFam ABC transporter B family member 1 1025 1274 - -
Seca12g00513 1279 CDD ABC_MTABC3_MDL1_MDL2 1035 1270 - -
Seca12g00513 1279 MobiDBLite consensus disorder prediction 652 697 - -
Seca12g00513 1279 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 647 IPR027417 -
Seca12g00513 1279 SUPERFAMILY ABC transporter transmembrane region 44 125 IPR036640 GO:0005524|GO:0016020
Seca12g00513 1279 MobiDBLite consensus disorder prediction 1 35 - -
Seca12g00513 1279 SUPERFAMILY ABC transporter transmembrane region 729 1019 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00513 Seca-Chr12 4574029 4579747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00513 13 653 Calmodulin-binding Proteins AT2G36910 36.378 1.16e-110 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00513 K05658 - gmx:100800293 1924.06