Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00508 ATGGTGATAATAAACCTTGGGAAGAAGATGAACCAGAGGGAGGGAACACGACTTGGGAAATACGAATTGGGTAGGACTCTTGGTGAAGGCAATTTTGGCAAAGTTAAGTTCGCCAGGAACACTGATTCTGGTCAATCTTTTGCCATTAAGATCATGGAGAAGAACAAAATCATCGATCTCAACATCACTAACCAGATAAAGAGGGAAATATCTGCCTTAAAGCTCCTCAGGCATCCCAATGTTGTTAAATTATACGAGGTCTTGGCTAGCAAAACAAAAATCTATATGGTACTTGAGTACGTGACTGGGGAGGAGTTATTCGATAAAATTGCATCCAAGGGTAAATTTACTGAAGGTGAAGGTAGAAAGTTGTTCCAACAGTTGATTGATGGTGTGAGCTACTGCCATAGTAAAGGTGTCTTCCACAGGGATCTCAAGCTTGAGAATGTGCTTGTGGATACCAAAGGGAATATAAAGATAACCGATTTTGGCCTTAGTGCTTTACCTCAGCAATTTGGGGGAGATGGATTGCTGCATACAACTTGTGGAAGTCCCAATTATGTTGCACCAGAGATTCTTGCTAATAGGGGCTATCATGGTGCAACATCAGATGTATGGTCATGTGGTGTTGTCTTATTTGTAATGTTAACAGGATACCTACCTTTTGATGATAGAAATCTTGCAGTTCTCTATCAAAAGATTTTTAAAGGAGATGTTCAGATACCAAAATGGTTATCACCTGGTGCACAAAACATTATAAAGAGGATTCTTGATCCCAACCCTAAAACCAGGATAACAATGGCTGGGATCAAAGAAGATCCATGGTTTAAGAAGGGTTATACTCCAGCAGATCCAGAGGATGAGGAAGAGGACATATATATAGATGATGAAGCCTTTTCCATCAATGAATTGCCACATGAAGCAGAACAGAGGAATTCAGGATCACCAATCCGTATCAATGCATTTCAGTTGATAGGGATGTCTTCATGCCTAGACCTCTCTGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGGTTTACGTCAAATCTTTCAGCCAAAGATCTGATAGAGAAGATTGAGGACGCTGCAACAGAAATGGAATTTAGAGTCCAGAAGAAAAATGGCAAATTGAAAGTGATGCAAGACAACAAGGCGCATAAAACTCTAGGCAGCCTCTCAGTGACAGTAGAGGTGTTTGAAATAAGCCCATCATGGTATGTAGTGGAATTAAGGAAGTCTTATGGAGATGGCTCTGTATATAGACAGTTATGCAAGAAGTTGTTGAATGATTTGGGTGCTCCACCAAGGCATGCGCCAGTGAGCTCAGAAGTGAACTAG 1347 0.4083 MVIINLGKKMNQREGTRLGKYELGRTLGEGNFGKVKFARNTDSGQSFAIKIMEKNKIIDLNITNQIKREISALKLLRHPNVVKLYEVLASKTKIYMVLEYVTGEELFDKIASKGKFTEGEGRKLFQQLIDGVSYCHSKGVFHRDLKLENVLVDTKGNIKITDFGLSALPQQFGGDGLLHTTCGSPNYVAPEILANRGYHGATSDVWSCGVVLFVMLTGYLPFDDRNLAVLYQKIFKGDVQIPKWLSPGAQNIIKRILDPNPKTRITMAGIKEDPWFKKGYTPADPEDEEEDIYIDDEAFSINELPHEAEQRNSGSPIRINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNLSAKDLIEKIEDAATEMEFRVQKKNGKLKVMQDNKAHKTLGSLSVTVEVFEISPSWYVVELRKSYGDGSVYRQLCKKLLNDLGAPPRHAPVSSEVN. 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00508 448 FunFam Non-specific serine/threonine protein kinase 14 316 - -
Seca12g00508 448 FunFam Non-specific serine/threonine protein kinase 12 100 - -
Seca12g00508 448 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Seca12g00508 448 ProSiteProfiles Protein kinase domain profile. 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00508 448 SUPERFAMILY Protein kinase-like (PK-like) 18 305 IPR011009 -
Seca12g00508 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Seca12g00508 448 SMART serkin_6 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00508 448 FunFam Non-specific serine/threonine protein kinase 316 437 - -
Seca12g00508 448 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Seca12g00508 448 Pfam NAF domain 318 375 IPR004041 GO:0007165
Seca12g00508 448 CDD CIPK_C 320 431 - -
Seca12g00508 448 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Seca12g00508 448 Pfam Protein kinase domain 21 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00508 448 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 419 - -
Seca12g00508 448 Gene3D Transferase(Phosphotransferase) domain 1 101 282 - -
Seca12g00508 448 Gene3D Kinase associated domain 1, KA1 314 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00508 Seca-Chr12 4525958 4530718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00508 84 436 CBL-interacting serine-threonine protein kinases AT3G17510 71.186 2.35e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca12g00508 Pkinase 1.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00508 K07198 - gmx:100777468 749.199