Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00498 ATGGGTTGCTTTGGCTTTTGCAAAGAAAATGATGCTTATACACCTTCTGACAAAGGACACTTCATCCAAACCAATCCTACTGGGAACACTGGTTATCAAGGCAGACACACAACAATAATCACTCCACAAACCATAAACTTTCAACCTATTTCTGTCCCTTCCCTTACAGTAGATGAATTGAAGTCTTTGACAGATAATTTTGGCTCAAAATCTTTCATTGGCGAGGGTGCATATGGGAAAGTATATCATGTCATATTGAAAAATGGACGTGAAGTGGCAATTAAAAAGTTAGATGCTAGTAAGCAGCCAGAGCAGGAATTTCTCTCTCAGGTCTCCATTGTATCAAGGCTCAAGCATGAAAACGTTCTTGAGCTTGTTTCTTATTGTGTTGATGGTCCTTTGCGTGCCCTTGCCTATGAGTATGCTCCTAATGGATCCCTTCATGATATTCTACACGGACGCAAAGGTGTCAAGGGTGCACAACCTGGTCTAGTTCTCTCATGGGCTCAGAGAGTTAAAATTGCTGTTGGCGCAGCCAGAGGACTTGAATATCTTCATGAAAAGGCAGAGACTCATATTATCCATCGTTACATTAAGTCTAGTAACATAATGCTTTTTGATGATGATGTTGCAAAGATTGCTGATTTTGATTTGTCAAATCAAGCCCCTGATGCAGCAGCACGCCTTCATTCTACCCGTGTTCTTGGAACCTTTGGTTATCATGCTCCAGAATATGCAATGACTGGGCAGCTCACTTCAAAAAGTGATGTTTACAGTTTTGGAGTTATATTGCTGGAACTCTTAACGGGGCGTAAACCTGTTGATCATACACTGCCTCGAGGACAACAAAGCCTTGTGACTTGGGCAACACCAAAGCTTAGTGAAGATAAGGTGAAGCAGTGTGTTGATGTTAGATTAAAGGGAGAGTACCCTTCAAAGTCAGTTGCAAAGATGGCTGCTGTTGCTGCATTGTGTGTACAATATGAAGCTGAGTTTCGGCCAAATATGAGCATCATAGTCAAAGCTCTACAGCCTCTACTCAATGCTCGTCCAAAGGAAGCACGGAACATGTAG 1074 0.4209 MGCFGFCKENDAYTPSDKGHFIQTNPTGNTGYQGRHTTIITPQTINFQPISVPSLTVDELKSLTDNFGSKSFIGEGAYGKVYHVILKNGREVAIKKLDASKQPEQEFLSQVSIVSRLKHENVLELVSYCVDGPLRALAYEYAPNGSLHDILHGRKGVKGAQPGLVLSWAQRVKIAVGAARGLEYLHEKAETHIIHRYIKSSNIMLFDDDVAKIADFDLSNQAPDAAARLHSTRVLGTFGYHAPEYAMTGQLTSKSDVYSFGVILLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCVDVRLKGEYPSKSVAKMAAVAALCVQYEAEFRPNMSIIVKALQPLLNARPKEARNM. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00498 357 PIRSF ILK 28 355 - -
Seca12g00498 357 CDD STKc_IRAK 73 346 - -
Seca12g00498 357 FunFam pto-interacting protein 1 143 354 - -
Seca12g00498 357 SUPERFAMILY Protein kinase-like (PK-like) 42 343 IPR011009 -
Seca12g00498 357 Gene3D Phosphorylase Kinase; domain 1 32 141 - -
Seca12g00498 357 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 35 352 - -
Seca12g00498 357 Gene3D Transferase(Phosphotransferase) domain 1 142 356 - -
Seca12g00498 357 Pfam Protein tyrosine and serine/threonine kinase 72 343 IPR001245 GO:0004672|GO:0006468
Seca12g00498 357 ProSitePatterns Protein kinases ATP-binding region signature. 73 96 IPR017441 GO:0005524
Seca12g00498 357 ProSiteProfiles Protein kinase domain profile. 67 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00498 Seca-Chr12 4455491 4458932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00498 48 344 Receptor kinase-like Gene Family AT4G02010 49.502 1.81e-88 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca12g00498 PK_Tyr_Ser-Thr 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00498 K13436 - gmx:547596 626.32