Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00497 ATGGGTGTGATTGTGCTACTGGCTGCTGTTCTTATTGCAGCAGCAACTCAAACTCAAACACAATCCTTGCCAAAGCCAAAGCCAAAGCCAGAGTGCCCAACAATAACAAAGTGTGGCTCCGTCAACATTCCGTTCCCATTTGGGCTAACCGAGGATTGTTCCCTAGACAGTTCTTTCGTAATCAGTTGCAACCAAACCTCTTCACCACACACACCTTTCTTGCCTACAAACAATCTAACTGTCCTAGACATCTCACTCAACGGCGAATTACGCGTTGCGTGGCCAGTAGCCAGCGATTGCTACGGTAATAATGGCACACTGGTGAGTGAAACGCCTCAATTCTTTGACCTCATGACGCCTCCTAATCCTAATCCTACTTTTCATTTATCGTCAACTCGAAACAAGTTGATGGTGGTTGGGTGTGACACCTTTGGACTAGTGCTTGGATACGATGCAGAGGAGAAGAACTACACCACTGGATGCATGTCTCTCTGCAACAGGCTCGATGACATCGTAGCCAATGGATCTTGCTCTGGCGTTGGTTGTTGCCAGACTTCAATACCCCAAAGGCTATCCAGTATGACGTATTCTTCTTTCTCCTTGGATAACCACACAAATGTGATTGCCTTCAATCCATGCGGTTACACTTTTCTGGTCGAAGATGGAGCCTACAATTTCACCTCCACAGATCTCGTCAGGTTTGAGACGACGGCGTTTCCTGTGGTGGTGGATTGGGCGGTGGGGAACCAAACATGCCGAGAAGCTAAGAAGGAGGCATCGAGTTATGCGTGTAAAGCTGACAGCAGTGAGTGTCACGATTCCCCTGAGGGAAAGGGAACTGGTTATCTTTGCAATTGCTCTGCTGGTTTTCAGGGGAACCCTTACCTCCTCAATGGCTGCCAAGATGTTGATGAATGCATGAAATCCAACAACTGCATTCCTGGAGCGATATGCAGCAACTTCCCTGGGGCCTACAATTGTTCATGCCCACAAGGATATAAAGAAGGATATGAAGGAGACGACAAAAGATGCATTCCTATATCTAATACCAATTCCAACAGAGAGATCATTCTCATAATTGCTTTGAGTGTGAGTGTAAGCATCATAGCAATACTCGTAGCAAGCTTTTATGTGTATCGCACAATGAAGAAAAGAAAGCTCATCAAACTTAAACAACAATTTTTTCATCAAAATGGTGGTCTATTGTTACAACAACAGATAGCCAGGCATAGAGGGTCAGCTGAAATGGCTAAAGTCTTCACTATAGAGGAGCTAAAGGAGGCTACCAATAACTTTGATGAAGGCAGGGTACTAGGCCAAGGTGGACAAGGAACAGTTTACAAAGGACTACTAGTAGATAACAGGATTGTAGCAATAAAAAAATCCAGAATCGGTGACCCAAAACAGATCGAGCAGTTCATCAATGAGGTGATCTTGCTTTCCCAAATCAACCATAGGAATGTGGTGAAGCTCTTAGGTTGTTGTTTAGAGACAGAATTTCCCTTGCTTGTTTATGAATTCATTCCCAATGGTACTATTTATGAGCACCTTCACGATCATCAAAGTCATTCTTTAAGACTTACATGGAAAACAAGGCTGAGAATAGCAACAGAAACTGCTGGAGCCTTGGCATACTTGCATTCTGCTACTTCTACACCAATCATACATAGAGATGTGAAAACTACAAATATACTACTTGATAGCAGTCTCACTGCAAAAGTTTCTGATTTTGGAGCTTCTAGAATTATTCCTCTTGATCAAAGTCAATTAACCACTTTGGTGCAAGGGACACTTGGGTATCTTGACCCAGAATACTTCCACACAAGCCAATTAACAGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCCTAGCAGAGCTACTGACAGGAAAAAAGGCACTTTCTTTTGATAGACCTGAGGTTGCTAGAAACCTTGCAGTGCATTTTGTTTCTTCAATGAAAGAGGGTCGGTTACTTGACATTGTCGACAAGGACATAATAGATGAGGCAAATGTTGAGCAACTGATGGTAGTTGCCAATATTGCAAAGATGTGTTTAAGGGTGAATGGAGAGGAAAGACCTACTATGAAAGAAGTGGCAATGGAACTTGAGGGAATGATGGGTATGGAAAAGCATCGATGGGAAAGTGTCAATTTGTCTTCAGAAGAGGCTGAAAACTTGCTCAAAGCAACAGTACCAGCTATTTTCAATGTTGAAGATGGTACTGTTAGTGGAAGTGGCATTAGTTCTTCTGGCTTTGATAGCTTAAATCATATTTCCATGTCATTAGGTGGTGGAAGGTGA 2304 0.431 MGVIVLLAAVLIAAATQTQTQSLPKPKPKPECPTITKCGSVNIPFPFGLTEDCSLDSSFVISCNQTSSPHTPFLPTNNLTVLDISLNGELRVAWPVASDCYGNNGTLVSETPQFFDLMTPPNPNPTFHLSSTRNKLMVVGCDTFGLVLGYDAEEKNYTTGCMSLCNRLDDIVANGSCSGVGCCQTSIPQRLSSMTYSSFSLDNHTNVIAFNPCGYTFLVEDGAYNFTSTDLVRFETTAFPVVVDWAVGNQTCREAKKEASSYACKADSSECHDSPEGKGTGYLCNCSAGFQGNPYLLNGCQDVDECMKSNNCIPGAICSNFPGAYNCSCPQGYKEGYEGDDKRCIPISNTNSNREIILIIALSVSVSIIAILVASFYVYRTMKKRKLIKLKQQFFHQNGGLLLQQQIARHRGSAEMAKVFTIEELKEATNNFDEGRVLGQGGQGTVYKGLLVDNRIVAIKKSRIGDPKQIEQFINEVILLSQINHRNVVKLLGCCLETEFPLLVYEFIPNGTIYEHLHDHQSHSLRLTWKTRLRIATETAGALAYLHSATSTPIIHRDVKTTNILLDSSLTAKVSDFGASRIIPLDQSQLTTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFDRPEVARNLAVHFVSSMKEGRLLDIVDKDIIDEANVEQLMVVANIAKMCLRVNGEERPTMKEVAMELEGMMGMEKHRWESVNLSSEEAENLLKATVPAIFNVEDGTVSGSGISSSGFDSLNHISMSLGGGR. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00497 767 ProSiteProfiles Protein kinase domain profile. 432 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00497 767 CDD STKc_IRAK 438 706 - -
Seca12g00497 767 Pfam Calcium-binding EGF domain 302 344 IPR001881 GO:0005509
Seca12g00497 767 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 318 329 IPR000152 -
Seca12g00497 767 SUPERFAMILY Protein kinase-like (PK-like) 416 703 IPR011009 -
Seca12g00497 767 FunFam Wall-associated receptor kinase 2 402 507 - -
Seca12g00497 767 ProSitePatterns Calcium-binding EGF-like domain signature. 302 327 IPR018097 GO:0005509
Seca12g00497 767 Pfam Protein tyrosine and serine/threonine kinase 435 703 IPR001245 GO:0004672|GO:0006468
Seca12g00497 767 ProSiteProfiles EGF-like domain profile. 302 345 IPR000742 -
Seca12g00497 767 CDD EGF_CA 302 333 - -
Seca12g00497 767 Gene3D Phosphorylase Kinase; domain 1 404 507 - -
Seca12g00497 767 Pfam Wall-associated receptor kinase galacturonan-binding 32 92 IPR025287 GO:0030247
Seca12g00497 767 SMART egfca_6 302 345 IPR001881 GO:0005509
Seca12g00497 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Seca12g00497 767 SUPERFAMILY EGF/Laminin 300 349 - -
Seca12g00497 767 SMART egf_5 305 345 IPR000742 -
Seca12g00497 767 SMART egf_5 251 301 IPR000742 -
Seca12g00497 767 FunFam Wall-associated receptor kinase 2 508 726 - -
Seca12g00497 767 SMART serkin_6 432 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00497 767 Gene3D Laminin 262 338 - -
Seca12g00497 767 Gene3D Transferase(Phosphotransferase) domain 1 508 727 - -
Seca12g00497 767 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 707 IPR045274 GO:0007166
Seca12g00497 767 FunFam Fibrillin 2 297 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00497 Seca-Chr12 4444987 4448522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00497 4 760 Receptor kinase-like Gene Family AT1G21230 46.084 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca12g00497 PK_Tyr_Ser-Thr 6.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00497 - - gmx:100798027 1032.71