Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00496 ATGGAGGCCAAATTTGGGGGAAAGAATCAGTATTTGTTTGGACCTGTGGTGTCTGAAATGAAGGGTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGACTGGAAATGGGATGGTGATCTTTTCACTGCTCATCCACTCAATTCAGTTCCATCAGATTGTAGGAGTCGCCAGTTTTTCCCACCTCATCCTGAAATTCCTGCAAAAATTGCTAATTTATCTACCAAGGAAGGAAGGAGGGAATTGGAGAAAAGGAGGAGGGGTGTTATAGGTGAAGGTGAAGGGGAAAGGGAGGAGCTGAATGATGAAGATGGTTCTTCTCTTAATTTGAACCTGGGGGGTCAAGTTTACCCTGTCATGGTTGAAGGGGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGAGACTACTACTACTACTACCTCTAACCGTGCTGTGTGTCAGGTGCAAGATTGTAGGGCTGATCTTAGTAATGCTAAGGATTACCACCGTCGCCACAAGGTTTGTGAGCTGCATTCTAAAGCCACTAAGGCATTAGTGGGAAATGTTATGCAGCGTTTCTGCCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCTGGCCACAATAGGAGGAGGAGGAAAACTCACCCCGATGCTGTAGTTAATGGAGGCTCCCTGAACGATGAAAGGGGCAGTAGCTATCTGTTAATGAGTCTGATACGGATACTGTCCAATATGCATTCAAATAGTTCAGATCATACAAGGAACCATGATATTCTCTCTCATCTGCTGAGGAACCTGGCAAGTCTGGCTGGTACAATTAATGGACGAAGTTTAGCCTCCTTATTGGAGGGATCTCAAGGTTTGGTAAATGGTGGGACACCTGGAACTGCGAATAATGTGCCTAGCCTTAATTCAAATGATCCTGAAGCTTCCAGACCCTCTGGTTCTTCCATCAAGACGGATAATGGCTTCATACGTCAGGACCCTCCAAAGTCTGCGGTGCAGTGTGAGACCTTGCCTGCTTATGGTATGACACAAAAATGTATACCTTCAGGCAATGATGGAGTGGGAAATATAAAACCTCCTCCAGGACCACAATCCTCAAATTTACTTCAATCAAGGGACAGCCTTCCATCCCAATTAATTGCTGGAGTTGGAAGGGACAACTTAAATAACATTGACCTGAATAATGTATACAATGATATGCAGAATAGCGTTGAGAATCCTAAGAAGCCTTATCCTCCTTTGGCTTCAGAGATTGGGTCTATTGATCATCCTTCATGGATGCGATGTGACTCTCTCAAGTCAAGTCCACCACAGACAAGTAGAAACTCAGATTCAACCTCTACCCAATCACCATCTAGTTCCAGTGGAGAAGCTCAGGGTCGCACAGATCGGATAGTTTTCAAACTCTTTGGCAAGGATCCAAATGATTTTCCCCTTGTTCTCCGTTCACAGATACTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGACCTGGATGTATCATATTAACAATATATCTTCGTCTAGAAAAATCTACATGGGAGGAGCTCTGCTGTAATCTAGGATCCAGCTTGAAAAAGCTTCTTGCTGCATCAAATGATTCTTTTTGGAGAAAAGGATGGATATATACAAGGGTGCAGCACTCTGTAGCTTTTCTGTATAATGGTTTGTTCTCCCTTACTGTGTGTGTGGTCTTGGTTACTCTAAATAGTTTTTCTATTTCATACATCTCTCCTGCAGGTCAGGTAGTCTTAGATGTGCCCTTGCGTCTCAAAAGCCCACAAAATTGCAGTATTTCATCTATTAAACCACTTGCTGTTCCTGCAAATGCACGTGCTCAATTTCTTGTGAAAGGATTCAACCTTTTGCGGTCCAACACAAGGTTGCACTGTGCACTTGAAGGGAAATATCTGGTCCATGACAGTTGTCATGCTTTGATTGATGGAGCTGATGCAGCCATTCATCATCTCAGCTTCTCTTGTCATATACCAACTGTGTCTGGGAGGGGTTTTATTGAGGTGGAAGATCATGGTCTTAGCAGCTGTTCATTTCCATTTATAGTTGCAGAGCAAGAAGTTTGTTCAGAGATCTGCGAGCTGGAGAATGTGATTGAGGCAGCTGAGGCCACTGAAGACATCCAGATAAAAAGCCAACAAATGGAGGAAAAGACTCGAGCTTTGGATTTCTTACAAGAAATGGGTTGGCTCCTTCATAGACGTCATGTGAATGTTAGGTTAGGTCCCATGGCACCTACCCATGATGTCTTCCATTTCAATCGGTTCATGTGGCTTGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTCTTGGATATTATATTTGAGGGTGGTGTTGATGTAGGAGAGCACACCTCCATTGAGCTTGCATTGTTAGACATGAGTCTTCTACACAAAGCTGTAAAGAGAAATTGTAGGCCTATGGTGGAACTACTGTTAAAATTTGTGCCAGTTAATACTTCAGATGGTGCAGACAGTGAAATGAAACAAGTTGACAAGACTGGTGACAGATTCTTATTTAGACCTGATACTGTTGGACCTGCCGGGTTGACTCCTCTTCATGTTGCAGCAAGTATGAATGGCTCGGAAAGTGTGTTGGATGCATTGACCGATGATCCAGGAATGGTTGGAATTGAAGCATGGAGAAGTGCCCGGGACAGTACAGGTTTGACACCAAATGACTATGCATGCCTCCGGGGCTACTACTCCTATATTCAACTTGTCCAGAAGAAGATCAGCAAAAGAAGTGAAGGACAACAACATGTGGTTGATATCCCTGGCACCCTTGTAGATAGTAACACAAAGCAGAAGCAATCAGATGGGCATAGGACATCTAAAGTTTCCTGTTTGCAGACTGAGAAGAAGATTGAAACTACTGCAGTGCCACGCCAATGTGGGATATGCCAGCACAAGCTGGCTTATGGTGGCATGAAAACAGCAGTGGTTTATAGGCCAGTCATGCTCTCAATGGTGACCATAGCAGCTGTTTGTGTCTGTGTAGCCTTGCTCTTCAAAAGCTCACCAAGAGTTTATTATGTGTTCCAGCCCTTCAACTGGGAATCATTGGAATATGGTGCAATCTAA 3159 0.4381 MEAKFGGKNQYLFGPVVSEMKGVGNGKRSLEWDLNDWKWDGDLFTAHPLNSVPSDCRSRQFFPPHPEIPAKIANLSTKEGRRELEKRRRGVIGEGEGEREELNDEDGSSLNLNLGGQVYPVMVEGEEKSGKKTKVIETTTTTTSNRAVCQVQDCRADLSNAKDYHRRHKVCELHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGGSLNDERGSSYLLMSLIRILSNMHSNSSDHTRNHDILSHLLRNLASLAGTINGRSLASLLEGSQGLVNGGTPGTANNVPSLNSNDPEASRPSGSSIKTDNGFIRQDPPKSAVQCETLPAYGMTQKCIPSGNDGVGNIKPPPGPQSSNLLQSRDSLPSQLIAGVGRDNLNNIDLNNVYNDMQNSVENPKKPYPPLASEIGSIDHPSWMRCDSLKSSPPQTSRNSDSTSTQSPSSSSGEAQGRTDRIVFKLFGKDPNDFPLVLRSQILNWLSHSPTEIESYIRPGCIILTIYLRLEKSTWEELCCNLGSSLKKLLAASNDSFWRKGWIYTRVQHSVAFLYNGLFSLTVCVVLVTLNSFSISYISPAGQVVLDVPLRLKSPQNCSISSIKPLAVPANARAQFLVKGFNLLRSNTRLHCALEGKYLVHDSCHALIDGADAAIHHLSFSCHIPTVSGRGFIEVEDHGLSSCSFPFIVAEQEVCSEICELENVIEAAEATEDIQIKSQQMEEKTRALDFLQEMGWLLHRRHVNVRLGPMAPTHDVFHFNRFMWLVDFSMDHGWCAVMKKLLDIIFEGGVDVGEHTSIELALLDMSLLHKAVKRNCRPMVELLLKFVPVNTSDGADSEMKQVDKTGDRFLFRPDTVGPAGLTPLHVAASMNGSESVLDALTDDPGMVGIEAWRSARDSTGLTPNDYACLRGYYSYIQLVQKKISKRSEGQQHVVDIPGTLVDSNTKQKQSDGHRTSKVSCLQTEKKIETTAVPRQCGICQHKLAYGGMKTAVVYRPVMLSMVTIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGAI. 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00496 1052 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Seca12g00496 1052 MobiDBLite consensus disorder prediction 299 340 - -
Seca12g00496 1052 Pfam SBP domain 149 222 IPR004333 GO:0003677
Seca12g00496 1052 MobiDBLite consensus disorder prediction 442 470 - -
Seca12g00496 1052 Gene3D - 725 939 IPR036770 -
Seca12g00496 1052 MobiDBLite consensus disorder prediction 299 332 - -
Seca12g00496 1052 FunFam Squamosa promoter-binding-like protein 14 140 210 - -
Seca12g00496 1052 SUPERFAMILY Ankyrin repeat 785 933 IPR036770 -
Seca12g00496 1052 Gene3D - 140 210 IPR036893 GO:0003677|GO:0005634
Seca12g00496 1052 MobiDBLite consensus disorder prediction 86 109 - -
Seca12g00496 1052 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Seca12g00496 1052 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 112 934 IPR044817 GO:0003677
Seca12g00496 1052 Coils Coil 721 748 - -
Seca12g00496 1052 MobiDBLite consensus disorder prediction 362 381 - -
Seca12g00496 1052 MobiDBLite consensus disorder prediction 437 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00496 Seca-Chr12 4428601 4435858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00496 25 1051 SBP-box Gene Family AT3G60030 45.014 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca12g00496 SBP 8.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00496 - - gsj:114419913 1594.71