Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00486 ATGCTTCACATTTTACAGGGCTGCAAGTCTGGCATCTCACATTTGCCTGTAGTTCCAGTAACCCTAGTTGGTAGCTCTCGAAGTAGTTCAGCGCCTTCCTCTACCAAAACAAACTCACCAATACCTGTTGTTCAAACTTCTTTGAGATCAAGTGCATATAAAGTTGATCAGAATAAGGATGTCAACTCACACAATGATCCTAGAGCCTCTTCTCATCCTCAACCTATCAGCAATTCCATACCACACAGTGCACCTCAGCTTGCACGTGAAGCCACTGGATTTTCTGAGTTATTGAGGAACCCCGTTATTTCATCATGGACATCTTCTCTCCCTACCTTTTCTCTTGGAACTGGCTTGTCTCCCTGGGCATTAATTCAGAACTCTAGCAGAAATACCGTTAATATGTATGATAAAGAACTTCATGTTGAAGGATCCATTGAAGGTCCTGAGGCAAACTTCAGTGTTCATAAACTAAGCGATGCAAGGTTAGATGCAGTTCGTGGAATGCAAGATGGTATAAATTTCAGAGATAAGCTCATCACTGACATGTATATCCAGCCAGTTACAAGAGTTTCACAGACTGTTAATCAGGTGCAGAAGGAGCATGATTTAGGTTCATTTCTTACACAATTCCATGATCATACTGATCATCCAGTTGTTGCAACTACTACAATCCTAGTTGAAGATGATGGTAATGACAAAGGTGAGTCAGAACATGTTGAATCTGGGGGATTGAAGAAGCTCGATAGTTTTGGAAGGTGGATGGATAAGGAGATTGGTGGAGACTGTGATAATTCCTTGATGGCTTCAGATTCTGGCATTTATTGGGGTACACTTGATGCTCATAATGAGGATAAGGAGGTGTCTAGTTTACACCACATGCAGTTGGATATGGATTCATTAGGCCCTTCTCTTTCCCAAGAGCAATTATTCAGTATCCATGACTTTTCTCCGGATTGGGCATATGCCGGGATTAGAACAAAGGTTTTAATAGTTGGTACATTTCTGGGGAGTAAAAAGCTTTCTAGTGAGACCAAATGGGGATGCATGTTTGGTGAAATAGAGGTTTCTGCTGAAGTTTTGACAGAGAATGTCATACGGTGTCAGACTCCTTTGCATTCACCTGGTCGCGTTCCATTCTATGTTACCTGCAGTAATAGGTTAGCCTGCAGCGAGGTCAGAGAATTTGAATATCATGAAAATCCTACTAAATTTATAAGTTCTGTGGGTATTAAAGTCTCACCAGAAGATGAGGTACAGCTTCAATTACGACTTCTTAAACTAGTAGAATTGGGACCTGACAAGAAGTGGTTGAAGTGCTCTGTTCCTGAATGTGAGAGATGTAAACTTAAGGGAACAATGTATTCCATGAAAGATGATAGTGGCGTATTTGAAGAAACTTTCCAGATTGATAGAAGTGAACAGATAAACCCTAGAGATGTATTATTTCAGAGATTAATCAGAGACAAGATTTATGAATGGTTGGTGTTTAAGGTTCATGAAGAAGAAAAAGGACTACATGTGTTGGATAATGAAGGCCAAGGAGTAATTCATTTGGCAGCTTCTCTTGGTTATGTGTGGGCTTTGGGCCCATTAGTTGGTGCGGGTATCAGTCCTAACTTCAGAGATGCACATGGAAGAACAGGACTTCACTGGGCATCATACTTTGGGAGAGAAGAAACTGTGATTGCGCTAGTCAAATTAGGTGCAGCCCCAGGTGCTGTTGAGGATCCAACATCAGCATTTCCTCGAGGAAAAACAGCAGCTGACTTAGCTTCAAGAAGAGGACATAAAGGCATTGCTGGGTATTTGGCTGAGGTAGATCTAACAAGTCAGTTATCTATATTGACTGTAAATGAAAATGAGATGTACAGCATTGCCACAACCACAGCAGCTGACAGTGCTTTTGAGGCTGCTGAAGGTGACTCATCTAATATGACAATGGATGAGCAACACTGTCTAAAGGAGTCACTTGCTGCTTTTCGAAAATCAGCTCATGCAGCTGCTTCGATCCAAGCAGTCTTTAGAGCAAGATCATTCTGTCAGAGACAATTAGCCAAAGGCAGCAGTGATATTTCTGAAACAGTACATGACCTAGTTGCTGATTCTTTGAACAAGGTTCAGAAGATGGGTCACTTTGAGGATTATTTACATTTTGCAGCTTTAAGGATTCAAAAGAGATATCGTGGGTGGAAAGGAAGAAAAGATTTTTTGAAAATACGCAATCGCATAGTAAAAATTCAGGCTCATTTTAGAGGGCACCGAGTTCGGAAGCAGTACAAAAAAGTTGTCTGGTCTGTTAGCATTGTGGAAAAGGCAATACTGCGTTGGAGACGGAAAGGAGCTGGTCTGCGAGGATTCCGGGTTGGGCAGCCTGTTGGCATTGTGCCAAAAGATGCTGAGAAAAGTGACGAGTATGATTTTCTTAGCATTGGGCGGAGACAGAAATCAGATGATGTAAAAAAAGCTCTGGATAGAGTTAAGTCCATGGTTCGTAACCCAGAGGCGCGGGATCAATATATGAGGCTCATCAAGAAGTATCAGAATTTTAAGATTGATGATGGCAGAAGCAGTCAATTGCAGCATGTTGATTAG 2595 0.4158 MLHILQGCKSGISHLPVVPVTLVGSSRSSSAPSSTKTNSPIPVVQTSLRSSAYKVDQNKDVNSHNDPRASSHPQPISNSIPHSAPQLAREATGFSELLRNPVISSWTSSLPTFSLGTGLSPWALIQNSSRNTVNMYDKELHVEGSIEGPEANFSVHKLSDARLDAVRGMQDGINFRDKLITDMYIQPVTRVSQTVNQVQKEHDLGSFLTQFHDHTDHPVVATTTILVEDDGNDKGESEHVESGGLKKLDSFGRWMDKEIGGDCDNSLMASDSGIYWGTLDAHNEDKEVSSLHHMQLDMDSLGPSLSQEQLFSIHDFSPDWAYAGIRTKVLIVGTFLGSKKLSSETKWGCMFGEIEVSAEVLTENVIRCQTPLHSPGRVPFYVTCSNRLACSEVREFEYHENPTKFISSVGIKVSPEDEVQLQLRLLKLVELGPDKKWLKCSVPECERCKLKGTMYSMKDDSGVFEETFQIDRSEQINPRDVLFQRLIRDKIYEWLVFKVHEEEKGLHVLDNEGQGVIHLAASLGYVWALGPLVGAGISPNFRDAHGRTGLHWASYFGREETVIALVKLGAAPGAVEDPTSAFPRGKTAADLASRRGHKGIAGYLAEVDLTSQLSILTVNENEMYSIATTTAADSAFEAAEGDSSNMTMDEQHCLKESLAAFRKSAHAAASIQAVFRARSFCQRQLAKGSSDISETVHDLVADSLNKVQKMGHFEDYLHFAALRIQKRYRGWKGRKDFLKIRNRIVKIQAHFRGHRVRKQYKKVVWSVSIVEKAILRWRRKGAGLRGFRVGQPVGIVPKDAEKSDEYDFLSIGRRQKSDDVKKALDRVKSMVRNPEARDQYMRLIKKYQNFKIDDGRSSQLQHVD. 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00486 864 ProSiteProfiles IQ motif profile. 717 746 IPR000048 GO:0005515
Seca12g00486 864 ProSiteProfiles IQ motif profile. 740 768 IPR000048 GO:0005515
Seca12g00486 864 ProSiteProfiles Ankyrin repeat profile. 545 577 IPR002110 GO:0005515
Seca12g00486 864 Pfam IPT/TIG domain 313 398 IPR002909 -
Seca12g00486 864 MobiDBLite consensus disorder prediction 58 85 - -
Seca12g00486 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 767 IPR027417 -
Seca12g00486 864 SUPERFAMILY E set domains 313 398 IPR014756 -
Seca12g00486 864 Gene3D - 488 610 IPR036770 -
Seca12g00486 864 Pfam IQ calmodulin-binding motif 720 737 IPR000048 GO:0005515
Seca12g00486 864 Pfam IQ calmodulin-binding motif 743 761 IPR000048 GO:0005515
Seca12g00486 864 FunFam Calmodulin-binding transcription activator 2 306 403 - -
Seca12g00486 864 CDD IPT 312 400 - -
Seca12g00486 864 FunFam Calmodulin-binding transcription activator 2 716 764 - -
Seca12g00486 864 SUPERFAMILY Ankyrin repeat 502 607 IPR036770 -
Seca12g00486 864 SMART ANK_2a 584 615 IPR002110 GO:0005515
Seca12g00486 864 SMART ANK_2a 545 574 IPR002110 GO:0005515
Seca12g00486 864 ProSiteProfiles Ankyrin repeat region circular profile. 545 570 - -
Seca12g00486 864 Gene3D - 715 764 - -
Seca12g00486 864 Gene3D Immunoglobulins 306 404 IPR013783 -
Seca12g00486 864 MobiDBLite consensus disorder prediction 67 85 - -
Seca12g00486 864 MobiDBLite consensus disorder prediction 24 43 - -
Seca12g00486 864 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 45 850 - -
Seca12g00486 864 SMART iq_5 739 761 IPR000048 GO:0005515
Seca12g00486 864 SMART iq_5 663 687 IPR000048 GO:0005515
Seca12g00486 864 SMART iq_5 716 738 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00486 Seca-Chr12 4342382 4347685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00486 245 858 CAMTA Transcription Factor Family AT5G64220 43.333 2.14e-162 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00486 K21596 - gmx:100818336 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00486 12 4342382 4347685 Seca12g00486 12 4342382 4347685 ECH