Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00472 ATGGTTGCGGAAGCGGAAATTATCTGTCAGCAGAGCATTCCCATGTTAGACGTGAAGTATCACCTTTGCGTGGCACAAGAACACAACGTAAAGGCTGAGGTTTCACCCACCTCACCTTCCCCTTCTGTCCAGATCTTTGGCCAAGCTGTGAGTTGCTCTGAGATCATTCAAGATTCCATTATGGAGATCCCTACAACGAAGTTTATCCCAAATGTGCGTTCTGGTAGCTATGCTGAAATTGGACCACGGGGATCTATGGATGATGAACACATTAGGATAGATGATCTAGCTGAGCACCTTGGATTTGTGTTCAAGTACCCAATACCAAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAGATTATTTTTTGAAGATTCTAGCATGCTGCAATCATATGATACTGATGCATTTTTTCTGAAGAAGTTGGAGGATTCTCATCGGAGAGCATTTTTACGGGCAGATCTTGCCTTGGCTGATGAAGAAAGTGTTAGTAGTTCATGTGGGACTACAGCATTGACTGCCCTTGTACTTGGAAGCCATTTGCTTGTTGCTAATGCTGGTGACTGTCGAGCAGTTCTTTGCAGGAGAGGTGCAGCTGTTGAGATTTCTCAAGATCATAGGCCAAGTTATTTACCGGAACGTAGGAGAGTGGAAGAGTTAGGTGGCTTCATTGATGATGGATATCTGAATGGTTATCTTTCTATAACCCGTGCCCTTGGGGATTGGGACTTAAAATTTCCACTTGGTGCTGCATCTCCTCTTATTGCTGAGCCCGATGTTCAACTGATTACATTGACAGAGGATGACGAGTTCTTGATCATTGGGTGCGATGGGATTTGGGATGTAATGTCTAGCCAATTTGCAGTTAGTCTTGTTCGTCGAGGATTAAGAAGGCATGATGACCCACAGCAATGTGCCAGAGAACTAGTCAAGGAAGCATTGCGGCTAAATACATCTGATAATGTCACTGTGATTGTTATATGTTTGTCCTCCATTGAAAGCATCGTTGAATCATGTCCGCCCCAAAGGCGAAGATTCAAAGCATGCAGTCTGTCTGAAGAGGCCCGTAATAGATTGAAGAGCTTGATAGAAGGAAATTGA 1143 0.4401 MVAEAEIICQQSIPMLDVKYHLCVAQEHNVKAEVSPTSPSPSVQIFGQAVSCSEIIQDSIMEIPTTKFIPNVRSGSYAEIGPRGSMDDEHIRIDDLAEHLGFVFKYPIPSAFYAVFDGHGGPDAAAFVKRNAMRLFFEDSSMLQSYDTDAFFLKKLEDSHRRAFLRADLALADEESVSSSCGTTALTALVLGSHLLVANAGDCRAVLCRRGAAVEISQDHRPSYLPERRRVEELGGFIDDGYLNGYLSITRALGDWDLKFPLGAASPLIAEPDVQLITLTEDDEFLIIGCDGIWDVMSSQFAVSLVRRGLRRHDDPQQCARELVKEALRLNTSDNVTVIVICLSSIESIVESCPPQRRRFKACSLSEEARNRLKSLIEGN. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00472 380 Gene3D - 63 348 IPR036457 -
Seca12g00472 380 SMART PP2C_SIG_2 88 343 IPR001932 -
Seca12g00472 380 SUPERFAMILY PP2C-like 66 344 IPR036457 -
Seca12g00472 380 ProSiteProfiles PPM-type phosphatase domain profile. 73 343 IPR001932 -
Seca12g00472 380 FunFam Probable protein phosphatase 2C 22 57 346 - -
Seca12g00472 380 CDD PP2Cc 72 343 IPR001932 -
Seca12g00472 380 PANTHER PROTEIN PHOSPHATASE 2C 57 341 IPR015655 GO:0004722|GO:0006470
Seca12g00472 380 Pfam Protein phosphatase 2C 83 336 IPR001932 -
Seca12g00472 380 ProSitePatterns PPM-type phosphatase domain signature. 112 120 IPR000222 GO:0043169
Seca12g00472 380 SMART PP2C_4 63 341 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00472 Seca-Chr12 4126685 4128948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00472 1 379 PP2C-type Phosphatase Gene Family AT1G48040 56.489 5.32e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00472 K14803 - gmx:100775577 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00472 12 4126685 4128948 Seca12g00472 12 4126685 4128948 ECH