Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00465 ATGGATGTAAAAGGAAGAAGAAGCAACACCACCTCCACCATCCTGCAGACTAGTAGTGATGAGGAGGATCAGATGGAGCTCCGAAGAGGCCCTTGGACCGTTGATGAGGACCTCACCCTCATCAATTACATTGCCACCCATGGCGAAGGTCGCTGGAATACCCTTGCCCTCTCTGCCGGCCTCAAACGCACAGGAAAGAGTTGCAGATTGAGGTGGCTCAACTATCTCCGTCCTGATGTTCGACGTGGAAACATCACTCTCCAAGAACAACTTCTCATTCTCGAGCTCCATACTCGCTGGGGAAACCGATGGTCCAAAATTGCCCAGTATTTACCGGGAAGAACTGACAATGAGATAAAGAACTATTGGAGAACGCGTGTGCAAAAGCTTGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGACTGGTAGAGCGCATTCAAGCAGCCAACACCTCCACTTCTCCAACTTCCATAACCGTTTCCGCGAATCACGCATCCATCTATAACAGCAATAACGGAAAAATGGACTTAACTCAGGCAGTTATGAACGGTGATTTTGCGGTTACGCAAAGTTATACCCCAGAGAACAGCAGCACAGGCGCCGCTTCATCATCAGATTCGTTTGGGACTCAACTCTCAGATTTAACTGATTATTACAGCGTCCCCGTTAATAGTCACGGTAACCCTAACAATAATAATGCTGCTGCTGCTGCTGCTGCTGCAGAACAGAATTATTATTATCAACCTTCTCAACTTAGCTACTCCGATTGCATCACTCAGGGAATGGAATATGTGGAGCCAAACACGCCGTGGATGCAGAGTGGAGACTCCTCCGATAATTTTTGGAACGTTGAAAATATGTTGTTTTTACAGCAGCAACTCATGAATGATAATTAA 936 0.4658 MDVKGRRSNTTSTILQTSSDEEDQMELRRGPWTVDEDLTLINYIATHGEGRWNTLALSAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKLAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAANTSTSPTSITVSANHASIYNSNNGKMDLTQAVMNGDFAVTQSYTPENSSTGAASSSDSFGTQLSDLTDYYSVPVNSHGNPNNNNAAAAAAAAEQNYYYQPSQLSYSDCITQGMEYVEPNTPWMQSGDSSDNFWNVENMLFLQQQLMNDN. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00465 311 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Seca12g00465 311 Gene3D - 85 149 - -
Seca12g00465 311 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g00465 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Seca12g00465 311 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 213 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca12g00465 311 CDD SANT 102 125 IPR001005 -
Seca12g00465 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 76 IPR017930 -
Seca12g00465 311 Gene3D - 26 82 - -
Seca12g00465 311 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Seca12g00465 311 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Seca12g00465 311 FunFam Myb transcription factor 29 81 - -
Seca12g00465 311 CDD SANT 31 76 IPR001005 -
Seca12g00465 311 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Seca12g00465 311 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Seca12g00465 311 FunFam MYB transcription factor 86 149 - -
Seca12g00465 311 SMART sant 28 78 IPR001005 -
Seca12g00465 311 SMART sant 81 129 IPR001005 -
Seca12g00465 311 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00465 Seca-Chr12 4044986 4046719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00465 1 303 MYB Transcription Factor Family AT3G06490 50.000 6.83e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g00465 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00465 K09422 - gmx:100791349 413.69