Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00460 ATGAAGACCATGGGAGGGCCCTTTTCTACTGGTTCTCTGAAGCTCAATCTCAACCCTCCAACAAGCCTCTCCTTCTCTGGCTCAATGGAGGAAGGACCCGGATGCTCCTCTATTGGGTATGGTGCAGTTGTTGAGATAGGACCTCTTTTAGTCAACAAAAATGGTGAAGGACTATCTTTCAACACATACTCATGGAATCAAGAAGCAAATTTGTTATTTGTGGAGTCCCCTGTTGGAGTTGGTTTTTCTTACACAAACACATCTTCTGATCTCACCATATTGGAGGATCATTTTGTGGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTGCAAAGATTCCCACAGTTCAAATCCCGGGACTTTTATATATCAGGAGAAAGCTATGCTGGACACTACATCCCTCAGCTTGCAGAGTTAGTCTTTGACAGGAACAAAGATAGTAACAAATACCCCTTTATTAATCTTAAAGGTTTTATTGTAGGGAATCCAGAAACTGAAGATTACTATGACTATAAAGGCCTTTTGGAATATGCATGGAGCCATGCAGTAATATCAGATCAGCAATATGACAAAGCAAAACAAGTTTGTGATTTCAAACAAATGGAATGGTCTAATGAATGCAATCAGGCCATGAATGAAGTCTTTCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCTTCATGTCATCTAAATAGCACATCTTCATTAGCTCTTGATAGTAAGAGTAATGACCCTGAATCACTCACAAAGGTGAGAAATGATTATAGAATAAGGAGGATGAGAATTTTTGGAGGCTATGACCCATGTTATTCCACATACGCACAACAATATTTCAATAAGATGGATGTTCAATCATCTTTTCATGTAAATACTAAAAGAGGAAACAACACTAATTTAACTTGGAAGGTTTGCAATGATTCCATATTGCGGACTTACAACTTCTCTGTTTTTTCGGTCCTACCCATTTACACCAAACTCATCAAGGGTGGACTTAAGATATGGGTTTACAGTGGAGATGCAGATGGCAGAGTACCAGTGATAGGGACACGATATTGCATTGAGGCTCTTGGATTACCCCTCAAGTCTAGTTGGCGGACTTGGTATCATCATAATCAGGTTGGAGGAAGGATAGTGGAGTATGAAGGGTTAACATATGTGACAGTGAGAGGAGCTGGTCATTTGGTGCCTCTCAATAAACCCAGTGAAGCTCTTTCTCTAATTCATTCTTTCCTAACAGGCGACCATCTCCCTACTCGTCCATGA 1275 0.4016 MKTMGGPFSTGSLKLNLNPPTSLSFSGSMEEGPGCSSIGYGAVVEIGPLLVNKNGEGLSFNTYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDHFVAEDAYNFLVNWLQRFPQFKSRDFYISGESYAGHYIPQLAELVFDRNKDSNKYPFINLKGFIVGNPETEDYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQMEWSNECNQAMNEVFQDYSEIDIYNIYAPSCHLNSTSSLALDSKSNDPESLTKVRNDYRIRRMRIFGGYDPCYSTYAQQYFNKMDVQSSFHVNTKRGNNTNLTWKVCNDSILRTYNFSVFSVLPIYTKLIKGGLKIWVYSGDADGRVPVIGTRYCIEALGLPLKSSWRTWYHHNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPSEALSLIHSFLTGDHLPTRP. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00460 424 FunFam Carboxypeptidase 71 234 - -
Seca12g00460 424 ProSitePatterns Serine carboxypeptidases, histidine active site. 387 404 IPR033124 GO:0004185
Seca12g00460 424 SUPERFAMILY alpha/beta-Hydrolases 20 421 IPR029058 -
Seca12g00460 424 Gene3D - 273 312 - -
Seca12g00460 424 Gene3D alpha/beta hydrolase 15 234 IPR029058 -
Seca12g00460 424 FunFam Carboxypeptidase 323 417 - -
Seca12g00460 424 Pfam Serine carboxypeptidase 32 416 IPR001563 GO:0004185|GO:0006508
Seca12g00460 424 ProSitePatterns Serine carboxypeptidases, serine active site. 124 131 IPR018202 GO:0004185
Seca12g00460 424 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 404 IPR001563 GO:0004185|GO:0006508
Seca12g00460 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 61 73 IPR001563 GO:0004185|GO:0006508
Seca12g00460 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 135 IPR001563 GO:0004185|GO:0006508
Seca12g00460 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 74 84 IPR001563 GO:0004185|GO:0006508
Seca12g00460 424 PRINTS Carboxypeptidase C serine protease (S10) family signature 387 400 IPR001563 GO:0004185|GO:0006508
Seca12g00460 424 Gene3D - 323 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00460 Seca-Chr12 3997334 4000974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00460 305 420 Calmodulin-binding Proteins AT2G22960 31.624 9.04e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00460 K16297 - gmx:100792930 737.643