Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00447 ATGAACTACCGTCGCAGCAGCCCCGGTGGCTTCCGCACTGGCGGCGCTGCTCCTCACCACCGCTCCTTTGATAGTCCCCCGCGTCGGTCTCCTGGCAGGGGCGGTGGCTTCCGGTCACCCCCTGCCGCCGAAGGGTTCAGGCCAATGGGTGGTGAGGGTCCTCCTGGAGGAGAATTTGGATTCAACAGTCACCAGCCACCGCCACTGTCTGGTCAGAAACGAGGGTTTCCTTTCTCTGGACGCGGACCTTCACCCGACCGCTTTGATGGTGGAAATTTTGCCAAACTTTTTGTTGGGTCTGTTCCCCGGACAGCTACTGAAGAAGATATTCGCCCTTTGTTTGAGGAACATGGGAACGTGATTGAGGTTGCCCTGATCAAAGATAGAAAGACAGGACATCACCAAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCTTTGCATAATCAACATACTCTTCCTGGTGGTGTTGGTCCCATCCAAGTCCGGTATGCTGATGGTGAACGGGAACGCCTTGGTGCTGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTTCAGTTAAGGAAGTCGAGGAAATTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTTATGCGTGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTTAAATACTCGCACAGAGATATGGCACTGGCAGCTATTAATGCACTCAATGGAATCTACACAATGAGAGGTTGTGAACAACCATTGATTGTCCGGTTTGCTGATCCAAAGAGACCTCGTCAAGGAGAATCCAGGGGTTCTGCATTTGGGGGTCCAGGGTTTGGTCCTAGATTTGATGCACCAGGCACTAGACTTCCATCCAACATTTCTGATCCTATGGGTGATCGTATGCCTCCCCCTAATGCCTGGCGTCCAATGCATCCACCAAATATGGGGCCATCCTCTAATTCTGGTTTTCATGGCATGGGCCCTCCGTTGCTTCCAAGATCTGGTGACATGGCAGCGTCTATAAATGGCGGTGGCCCTATGACTGGCATGGGAGTCCCCAGAGATGGTCGTTTTCAAGTTCCGTCATCAATGCCACAACAGAATTTCAACCAGCCTCTACCGCAAATTCCACCAGTCAATCAACAAATATCACCATTGAAGAAACCTATTCAATCATCTCAGGAGTTACCACATTCCCACCAGTTCTATCCTCAAGCTCCGATGCCCTACCCACAAACATCAACACTTCCATCTCTTAGGCAGCATGGTCAGCCTCAACTTCCTCTCTCTGGTAGTCCTCTTCCATCACAGCAGGGACTTGGCATAAGTGGACAGTTTCCAACTTCTCAGCCCCAAACTCAGCAGAGTGCTGTGTCTGCTGCAATTCCTCAGGCCCCTTTTGATACCGGTAGGCAATTTAATACACCATTGACTACACCAAATCAGCAGCAAGTTCCTCCCTCTATGCAACAGCAATCACTTCAACCTCTTCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACAACAGACACAGAATTTACAAGCAAGCTTTCATTCATCTCAGCAGGCCTTCTCCCAGCTTCAACAACAATTACAGATGATGCAGCCATTACCATCTAAGCAAAATTCAGACACTACTAAAAAGCAGCCTCAATGGGCTGGATCTGTAGCACAGGCAGTGGCCAGCACTCATGTAGCTGCACCTGCTGCAGATGTGCCTCCATCCACATCTGCTACTTCTGCTGTAGCAGCAATAAGCCAGAACACGACTCCTGCAAAATGTAACTGGACAGAACATTTATCTCCTGAGGGCTTCAAGTACTACTATAATAGTGTCACTGGGGAAAGTCGGTGGGAGAAACCTGAGGAGCTGATATTATCTGAACAGCAAAAGCAACAACAGAGGCCATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCTTCAATACTACCCGCCCAGCAAGTTGCACAAATCCAACAGGTACAGCCCCAAAGTCATCTCCAAGGACAGGTTCTCCACCAGCAACAAATACAGCAGCCTTCTTTGTCTTCTTCATTCCAGGCATATGGAGTTACAGGTCACCAAAATGTTCAGGAAGTTGGTTATAAACAGTTACAGGCATCGGTTATTTCTGCTGGTGATCCTGGACGCTACTCTCAGGGTATTAATACCACACAAGAGTTAATGTGGAAAAACAAGCATGCAGGTTCTAGTCCTTACACCCACTTTTTTACCCTGAATACATGCAAACACACACAAAGTACATGGGCTTTAGTCTTTTGGTGTCTTCTTTACTTATTCCTTTTTCTTGGGGGTAATGGATGTTCATTAAAAGGGAATAAGATTATATTGATTTTTAAATTTTGA 2388 0.4732 MNYRRSSPGGFRTGGAAPHHRSFDSPPRRSPGRGGGFRSPPAAEGFRPMGGEGPPGGEFGFNSHQPPPLSGQKRGFPFSGRGPSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDRKTGHHQGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFADPKRPRQGESRGSAFGGPGFGPRFDAPGTRLPSNISDPMGDRMPPPNAWRPMHPPNMGPSSNSGFHGMGPPLLPRSGDMAASINGGGPMTGMGVPRDGRFQVPSSMPQQNFNQPLPQIPPVNQQISPLKKPIQSSQELPHSHQFYPQAPMPYPQTSTLPSLRQHGQPQLPLSGSPLPSQQGLGISGQFPTSQPQTQQSAVSAAIPQAPFDTGRQFNTPLTTPNQQQVPPSMQQQSLQPLQQSPSQLAQMLSQQTQNLQASFHSSQQAFSQLQQQLQMMQPLPSKQNSDTTKKQPQWAGSVAQAVASTHVAAPAADVPPSTSATSAVAAISQNTTPAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELILSEQQKQQQRPSVQQSQTQSQPSILPAQQVAQIQQVQPQSHLQGQVLHQQQIQQPSLSSSFQAYGVTGHQNVQEVGYKQLQASVISAGDPGRYSQGINTTQELMWKNKHAGSSPYTHFFTLNTCKHTQSTWALVFWCLLYLFLFLGGNGCSLKGNKIILIFKF. 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00447 795 SMART rrm1_1 95 171 IPR000504 GO:0003723
Seca12g00447 795 SMART rrm1_1 186 261 IPR000504 GO:0003723
Seca12g00447 795 ProSitePatterns WW/rsp5/WWP domain signature. 603 628 IPR001202 GO:0005515
Seca12g00447 795 SUPERFAMILY RNA-binding domain, RBD 75 179 IPR035979 GO:0003676
Seca12g00447 795 MobiDBLite consensus disorder prediction 265 330 - -
Seca12g00447 795 SUPERFAMILY WW domain 602 633 IPR036020 GO:0005515
Seca12g00447 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 175 IPR000504 GO:0003723
Seca12g00447 795 Gene3D - 596 645 - -
Seca12g00447 795 FunFam Flowering time control protein FCA 181 271 - -
Seca12g00447 795 FunFam flowering time control protein FCA isoform X2 88 180 - -
Seca12g00447 795 Pfam WW domain 602 628 IPR001202 GO:0005515
Seca12g00447 795 SUPERFAMILY RNA-binding domain, RBD 185 286 IPR035979 GO:0003676
Seca12g00447 795 PANTHER RNA BINDING PROTEIN 63 530 - -
Seca12g00447 795 Gene3D - 181 274 IPR012677 -
Seca12g00447 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 159 IPR000504 GO:0003723
Seca12g00447 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 254 IPR000504 GO:0003723
Seca12g00447 795 SMART ww_5 598 630 IPR001202 GO:0005515
Seca12g00447 795 CDD WW 600 630 IPR001202 GO:0005515
Seca12g00447 795 MobiDBLite consensus disorder prediction 634 658 - -
Seca12g00447 795 MobiDBLite consensus disorder prediction 365 563 - -
Seca12g00447 795 MobiDBLite consensus disorder prediction 1 89 - -
Seca12g00447 795 MobiDBLite consensus disorder prediction 347 563 - -
Seca12g00447 795 Gene3D - 90 180 IPR012677 -
Seca12g00447 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 265 IPR000504 GO:0003723
Seca12g00447 795 ProSiteProfiles WW/rsp5/WWP domain profile. 597 630 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00447 Seca-Chr12 3908694 3920836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00447 94 300 Eukaryotic Initiation Factors Gene Family AT1G71770 23.671 1.21e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00447 - - gmx:100798390 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00447 12 3908694 3920836 Seca12g00447 12 3908694 3920836 ECH