Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00445 ATGAGCATCAACACCAACAGCAGCTTCGATTTTCCTTTCTCACCATCACCGAGCATCTTTGACATGATGGAACCACTACCACCACCAGATCAAAACACTCTTAGCTTCAAGGAATTGCTCTGTACCAAGGATTTCAATTCAAACGAATCTTTATTCGATTTGTTCCCCACCATCACCACAGAGGATGCTACAAACACCAACATTAGCTTCAAGGAATTGCTCTGTACCAAGGATTTCAATTCAAACCAATCTATATTCGATTTGTTCCCCACCATCACCATAGAGGATGCTACAAACACCAACACTGTTGCTCCTCTCGCATCCACCAAAATCAACCAGCCTCTTCCTTCACCTCCAACAAGCTCTAATGTCGTAGATTGCTCTGAGGTACTCAACAGCACTCCAGCCACACCGAAGTTCTTCTCCATTACGTCATCGCCAAACGAAGCTGCCGTCGGAGGAAACAAATCACCTGAAGCAGAGAACGATGGAGAAAAAAATGCAGATGCAGCGAAAGGAGACGAAAATCAAATTCAAGATGAGATCACCAACAAACATGGAATGGGAATTAGGGTGAAAGAAAAGAAGATGAAGAGCCCAACGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATAGATGGCGCAAATATGGCCAAAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACTTATGACGACAACCACACCCACCCCTGCCCGAACTTGTCCAAACATCGTTCTAGCCTCGGCTACCGAGCCTATGGCTCGGGTAGGGGTAATGCCACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTCGCCCGGTGCTGGAGCAACAGCGCCAGCAATTTCAGAACCTGCAGAATAATGATGTTCAATATCGTGCCAATGCGTCGTCGTTTAGTAGCAGCAGCAGCTTCCTTCAGGATCACAACCAAGGTGGTAGTTTTGTGCCATCTACATGGATGAGTGTTGCTCCTCGTCAAGGTTTGTTACCAGCTGGCAATGGGCTTCTTGAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA 1179 0.4699 MSINTNSSFDFPFSPSPSIFDMMEPLPPPDQNTLSFKELLCTKDFNSNESLFDLFPTITTEDATNTNISFKELLCTKDFNSNQSIFDLFPTITIEDATNTNTVAPLASTKINQPLPSPPTSSNVVDCSEVLNSTPATPKFFSITSSPNEAAVGGNKSPEAENDGEKNADAAKGDENQIQDEITNKHGMGIRVKEKKMKSPTKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDDNHTHPCPNLSKHRSSLGYRAYGSGRGNATAANSVGFSSSTRPVLEQQRQQFQNLQNNDVQYRANASSFSSSSSFLQDHNQGGSFVPSTWMSVAPRQGLLPAGNGLLEDIIMSAQMQRGQGIN. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00445 392 MobiDBLite consensus disorder prediction 138 152 - -
Seca12g00445 392 Coils Coil 314 334 - -
Seca12g00445 392 SUPERFAMILY WRKY DNA-binding domain 210 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00445 392 MobiDBLite consensus disorder prediction 159 181 - -
Seca12g00445 392 Pfam WRKY DNA -binding domain 218 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00445 392 MobiDBLite consensus disorder prediction 138 181 - -
Seca12g00445 392 ProSiteProfiles WRKY domain profile. 212 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00445 392 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 113 322 IPR044810 GO:0003700
Seca12g00445 392 FunFam WRKY transcription factor 57 203 277 - -
Seca12g00445 392 Gene3D WRKY domain 204 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00445 392 SMART WRKY_cls 217 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00445 Seca-Chr12 3887811 3889355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00445 159 277 WRKY Transcription Factor Family AT4G18170 55.833 6.05e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00445 WRKY 8.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00445 - - gsj:114394278 216.853