Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00444 ATGGAACCACCACCACCACCAGATCACAACACTCTTAGCTTCAATGAATTGCTCTGTACCAAGGATTTCAATTCAAACGAATCTTTATTCGATTTGTTCCCCACCATCACCACAGAGGATGCTACAAACACCAATATTAGCTTCAAGGAATTGCTCTGTACCAAGGAATTCAATTTAAACCAATCTATATTCGATTTGTTCCCCACCATCACCACGGAGGATGCTACAAACACCAACACCAACACCAACACCATCACCAACACCGTTGCTCCTCCCGCATCCACCAAAATCAACCAGCCTCTTCCTTCACCTCCAGCAAGCTCCAACGTCGTAGATTGCTCTGAGGTACTCAACAGCACTCCAGCCACACCGAACTTCTTCTCCATTACGTCATCGCCAAACGAAGCTGCCGTCGGAGGAAACAAATCACCTAAGGTGGAGAACGACGGAGAAAAAAATGCAGATGCTGAGAAAGGAGACGAAAATCAAGTTCAAGATGAGATCACCAACAAACAAATGAGAATTAGGGTGAAAGAAAATATGAAGACGAGCCCAGCGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATAGGTGGCGCAAATACGGCCAGAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACCTATGACGGCAACCACACCCACCCTTGCCCGGTCTTGTCCAACCATCGTTCCAGCCTCGGCTACCGAGCCTATGGTTCGGGTATGGGTAATGCTACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTCGCCTGGTGCTGGACCAACATCGCCATCAATTTCAGAACCTGCAGAATAATGTTGTTCAATATCGTGCCAATGCGGCATCGTTTAGCAGCAACAACAACTTCCTTCAGAATCATAACCAAGGTGGTAGTTTTGTGTCATCTACATGGATGAGTGATGCTCCTCGTCAGGGTTTGTTACCAGCTAGCAATGGGCTTCCTCAGGAAATTATCATGTCAGCCCAGATGCAACGAGAACAAGGAATTAACTGA 1134 0.4727 MEPPPPPDHNTLSFNELLCTKDFNSNESLFDLFPTITTEDATNTNISFKELLCTKEFNLNQSIFDLFPTITTEDATNTNTNTNTITNTVAPPASTKINQPLPSPPASSNVVDCSEVLNSTPATPNFFSITSSPNEAAVGGNKSPKVENDGEKNADAEKGDENQVQDEITNKQMRIRVKENMKTSPAKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDGNHTHPCPVLSNHRSSLGYRAYGSGMGNATAANSVGFSSSTRLVLDQHRHQFQNLQNNVVQYRANAASFSSNNNFLQNHNQGGSFVSSTWMSDAPRQGLLPASNGLPQEIIMSAQMQREQGIN. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00444 377 MobiDBLite consensus disorder prediction 145 167 - -
Seca12g00444 377 SUPERFAMILY WRKY DNA-binding domain 195 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00444 377 MobiDBLite consensus disorder prediction 124 138 - -
Seca12g00444 377 Pfam WRKY DNA -binding domain 203 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00444 377 FunFam WRKY transcription factor 57 188 262 - -
Seca12g00444 377 Gene3D WRKY domain 186 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00444 377 SMART WRKY_cls 202 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00444 377 MobiDBLite consensus disorder prediction 124 167 - -
Seca12g00444 377 Coils Coil 299 319 - -
Seca12g00444 377 MobiDBLite consensus disorder prediction 78 109 - -
Seca12g00444 377 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 106 307 IPR044810 GO:0003700
Seca12g00444 377 ProSiteProfiles WRKY domain profile. 197 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00444 Seca-Chr12 3869638 3871141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00444 94 290 WRKY Transcription Factor Family AT2G47260 48.000 2.36e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00444 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00444 - - gmx:100808190 219.55