Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00440 ATGAGCATCAACACCAACAGCAGCTTCGATTTTCCTTTCTCACCATCACCGAGCATCTTTGACATGATGGAACCACTACCACCACCAGATCAAAACACTCTTAGCTTCAAGGAATTGCTCTGTACCAAGGATTTCAATTCAAACGAATCTTTATTCGATTTGTTCCCCACCATCACCACAGAGGATGCTACAAACACCAACATTAGCTTCAAGGAATTGCTCTGTACCAAGGATTTCAATTCAAACCAATCTATATTCGATTTGTTCCCCACCATCACCATAGAGGATGCTACAAACACCAACACTGTTGCTCCTCTCGCATCCACCAAAATCAACCAGCCTCTTCCTTCACATCCAGCAAGCTCTAATGTCGTAGATTGCTCTGAGGTACTCAACAGCACTCCAGCCACACCGAACTTCTTCTCCATTACGTCATCGCCAAACGTAGCTGCCGTCGGAGGAAACAAATCACCTGAAGCAGAGAACGACGGAGAAAAAAATGCAGATGCAGCGAAAGGAGACGAAAATCAAATTCAAGATGAGATCACCAACAAACATGGAATGGGAATTAGGGTGAAAGAAAAGAAGATGAAGAGCTCGACGAAGAAAGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATAGATGGCGCAAATATGGCCAAAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACTTATGACGGCAACCACACCCACCCCTGCCCGAACTTGTCCAAACATCGTTCTAGCCTCGGCTACCAAGCCTATGGCTCGGGTAGGGGTAATGCCACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTCGCCCGGTGCTGGAGCAACAACGCCGGCAATTTCAGAACCTGCAGAATAATGATGTTCAATATCGTGCCAATGCGTCGTCGTTTAGTAGCAGCAGCAGCTTCCTTCAGGATCACAACCAAGGTGGTAGTTTTGTGCCATCTACATGGATGAGTGTTGCTCCTCGTCAAGGTTTGTTACCAGCTGGCAATGGGCTTCTTGAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA 1179 0.4699 MSINTNSSFDFPFSPSPSIFDMMEPLPPPDQNTLSFKELLCTKDFNSNESLFDLFPTITTEDATNTNISFKELLCTKDFNSNQSIFDLFPTITIEDATNTNTVAPLASTKINQPLPSHPASSNVVDCSEVLNSTPATPNFFSITSSPNVAAVGGNKSPEAENDGEKNADAAKGDENQIQDEITNKHGMGIRVKEKKMKSSTKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDGNHTHPCPNLSKHRSSLGYQAYGSGRGNATAANSVGFSSSTRPVLEQQRRQFQNLQNNDVQYRANASSFSSSSSFLQDHNQGGSFVPSTWMSVAPRQGLLPAGNGLLEDIIMSAQMQRGQGIN. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00440 392 SMART WRKY_cls 217 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00440 392 SUPERFAMILY WRKY DNA-binding domain 210 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00440 392 Coils Coil 314 334 - -
Seca12g00440 392 Gene3D WRKY domain 201 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00440 392 MobiDBLite consensus disorder prediction 159 177 - -
Seca12g00440 392 ProSiteProfiles WRKY domain profile. 212 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00440 392 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 134 320 IPR044810 GO:0003700
Seca12g00440 392 MobiDBLite consensus disorder prediction 151 177 - -
Seca12g00440 392 FunFam WRKY transcription factor 57 203 277 - -
Seca12g00440 392 Pfam WRKY DNA -binding domain 218 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00440 Seca-Chr12 3851350 3852890 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00440 176 277 WRKY Transcription Factor Family AT1G29860 60.185 2.76e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00440 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00440 - - gmx:100808190 215.312