Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g00439 | ATGAGAATTAGCGTGAAAGAAAATATGAAGACGAGCCCAACGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATGGGTGGCGCAAATACGTCCAGAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTAGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACCTATGACGGCAACCACACCCACCCTTGCCCGGTCTTGTCCAACCATCGTTCCAGCCTCGGCTACCGAGCCTATGGCTCGGGTAGGGGTAATGCTACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTCGCCTGGTGCTGAAGCAACATCGCCATCAATTTCAGAACCTGCAGAATAATGTTGTTCAATATCGTGCCAATGCGGCATCGTTTAGCAGCAGCAACAGCTTCCTTCAGAATCACAACCAAGGTGGTAGTTTTGTGTCATCTACATGGATGAGTGATGCTCCTCGTCAGGGTTTGTTACCAGCTGGCAATGGGCTTCTTCAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA | 618 | 0.4935 | MRISVKENMKTSPTKKGRFAFKTKSEVDHLDDGYGWRKYVQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDGNHTHPCPVLSNHRSSLGYRAYGSGRGNATAANSVGFSSSTRLVLKQHRHQFQNLQNNVVQYRANAASFSSSNSFLQNHNQGGSFVSSTWMSDAPRQGLLPAGNGLLQDIIMSAQMQRGQGIN. | 206 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g00439 | 205 | Coils | Coil | 127 | 147 | - | - | |
Seca12g00439 | 205 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 14 | 133 | IPR044810 | GO:0003700 | |
Seca12g00439 | 205 | Pfam | WRKY DNA -binding domain | 31 | 88 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca12g00439 | 205 | ProSiteProfiles | WRKY domain profile. | 25 | 90 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca12g00439 | 205 | SMART | WRKY_cls | 30 | 89 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Seca12g00439 | 205 | Gene3D | WRKY domain | 15 | 91 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca12g00439 | 205 | SUPERFAMILY | WRKY DNA-binding domain | 23 | 90 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Seca12g00439 | 205 | FunFam | WRKY transcription factor 57 | 16 | 90 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g00439 | Seca-Chr12 | 3831394 | 3832117 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g00439 | 15 | 195 | WRKY Transcription Factor Family | AT5G49520 | 45.596 | 1.33e-40 | 140 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Seca12g00439 | WRKY | 6e-24 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g00439 | - | - | gmx:100812252 | 161.77 |