Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00439 ATGAGAATTAGCGTGAAAGAAAATATGAAGACGAGCCCAACGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATGGGTGGCGCAAATACGTCCAGAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTAGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACCTATGACGGCAACCACACCCACCCTTGCCCGGTCTTGTCCAACCATCGTTCCAGCCTCGGCTACCGAGCCTATGGCTCGGGTAGGGGTAATGCTACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTCGCCTGGTGCTGAAGCAACATCGCCATCAATTTCAGAACCTGCAGAATAATGTTGTTCAATATCGTGCCAATGCGGCATCGTTTAGCAGCAGCAACAGCTTCCTTCAGAATCACAACCAAGGTGGTAGTTTTGTGTCATCTACATGGATGAGTGATGCTCCTCGTCAGGGTTTGTTACCAGCTGGCAATGGGCTTCTTCAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA 618 0.4935 MRISVKENMKTSPTKKGRFAFKTKSEVDHLDDGYGWRKYVQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDGNHTHPCPVLSNHRSSLGYRAYGSGRGNATAANSVGFSSSTRLVLKQHRHQFQNLQNNVVQYRANAASFSSSNSFLQNHNQGGSFVSSTWMSDAPRQGLLPAGNGLLQDIIMSAQMQRGQGIN. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00439 205 Coils Coil 127 147 - -
Seca12g00439 205 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 133 IPR044810 GO:0003700
Seca12g00439 205 Pfam WRKY DNA -binding domain 31 88 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00439 205 ProSiteProfiles WRKY domain profile. 25 90 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00439 205 SMART WRKY_cls 30 89 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00439 205 Gene3D WRKY domain 15 91 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00439 205 SUPERFAMILY WRKY DNA-binding domain 23 90 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00439 205 FunFam WRKY transcription factor 57 16 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00439 Seca-Chr12 3831394 3832117 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00439 15 195 WRKY Transcription Factor Family AT5G49520 45.596 1.33e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00439 WRKY 6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00439 - - gmx:100812252 161.77