Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00437 ATGGCGAATTCTCTCTCATTTCCGAAAGAGATTCTGAACATGAGCATCAACACCAACGACAGCTTCGGTTTTCCTCTCTCACCATCACCGAGCATCTTTGACATGATGGAACCACCACCACCACCACCGGATCACAACACTCTTAGCTTCAAGGATTTCAATTCAAACCAATCTATATTCGATCTGTTCCCCACCATCACCACAGAGGATGCTACAAACACCAACACCAACACCATCACCAACACCGTTGCTCCTCTCGCATCCACCAAAATCAACCAGCCTCTTCCTTCACCTCCAGCAAGCTCCAACGTCGTAGATTGCTCTGAGGTACTCAACAACACTCCAGCCACACCGAACTTCTTCTCCATTACGTCATCGCCGAATGAAGCTGCCGTCGGAGGAAACAAATCACCTGAAGCGGAGAACGACGGAGAAAAAAATGCAGATGCAGAGAAAGGAGACGAAAATCAAATTCGTGATGAGATCACCAACAAACAAATGAGAATTAGGGTGAAAGAAAAGAAGAATAAGAGCCCAACGAAGAAGGGTAGATTTGCTTTCAAGACAAAGAGCGAAGTGGATCACTTAGACGATGGGTATAGGTGGCGCAAATACGGCCAGAAAGCTGTGAAAAACAGCCCCTATCCAAGGAGTTACTACCGTTGCACCGCTGATGGTTGTGGCGTGAAGAAGCGAGTGGAGCGATCCTATGAGGACCCGTCCACCGTGGTCACCACCTATGACGACAACCACACCCACCCCTGCCCGGTCTTGTCCAACCATCGTTCCAGGCTCGGCTACCGAGCCTATGGCTCGGGTAGGGGTAATGCTACTGCTGCTAATTCTGTTGGATTTAGTTCTTCAACTTGCCTAGTGCTGGAGCAACAGCGCCAACAATTTCAGAACCTGCAGAATAATATTGTTCAATATCGTGCCATTGCGGCGTCGTTTAGTAGCAGCAACAGCTTCCTTCAGAATCACAACCAAGGTGGTAGTTTTGTGTCATCTACATGGATGAGTGATGCTCCTCGTCAGGGTTTGTTACCAGCTGGCAATGGGCTTCTTCAGGACATTATCATGTCAGCCCAGATGCAACGAGGACAAGGAATTAACTGA 1116 0.4839 MANSLSFPKEILNMSINTNDSFGFPLSPSPSIFDMMEPPPPPPDHNTLSFKDFNSNQSIFDLFPTITTEDATNTNTNTITNTVAPLASTKINQPLPSPPASSNVVDCSEVLNNTPATPNFFSITSSPNEAAVGGNKSPEAENDGEKNADAEKGDENQIRDEITNKQMRIRVKEKKNKSPTKKGRFAFKTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTADGCGVKKRVERSYEDPSTVVTTYDDNHTHPCPVLSNHRSRLGYRAYGSGRGNATAANSVGFSSSTCLVLEQQRQQFQNLQNNIVQYRAIAASFSSSNSFLQNHNQGGSFVSSTWMSDAPRQGLLPAGNGLLQDIIMSAQMQRGQGIN. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00437 371 MobiDBLite consensus disorder prediction 139 161 - -
Seca12g00437 371 SUPERFAMILY WRKY DNA-binding domain 189 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00437 371 Gene3D WRKY domain 181 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca12g00437 371 MobiDBLite consensus disorder prediction 118 132 - -
Seca12g00437 371 ProSiteProfiles WRKY domain profile. 191 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00437 371 SMART WRKY_cls 196 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00437 371 Pfam WRKY DNA -binding domain 197 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca12g00437 371 MobiDBLite consensus disorder prediction 118 161 - -
Seca12g00437 371 Coils Coil 293 313 - -
Seca12g00437 371 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 113 294 IPR044810 GO:0003700
Seca12g00437 371 FunFam WRKY transcription factor 57 182 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00437 Seca-Chr12 3816967 3818570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00437 84 365 WRKY Transcription Factor Family AT2G47260 39.510 2.62e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca12g00437 WRKY 7.5e-25 CL0274