Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00436 ATGGCATCATCATCATCATTATCACCATCACCATCACCATCGTCATCTCTGATCTCAAACGCGGTAACGAACACGGACCGGTCACGTGACTCAAAGAGGAGGAGGAAGAAGAAGGCACAGCAGTTAAAGCATCAGCAACAAGAAGAACAGAGCAATCCGAAATGGAAATCCCAAACGCAGCAACAAATCTACTCCTCCAAGCTTCGTCAAGCCTTAACCAGAGTCAACCACGGCTCATCCACCTCCCGAGGCAAAGCCGTTCGTGAAGCCGCCGACAGAGCCCTCGCCGTGACGGCTAAAGGGAGGAGTCGCTGGAGCCGAGCCATCTTAACGAACCGGCTCAAGCTTAAGTTCAGGAAGCACAAGAGGCAGAGAGTTACGGCACCGTCGCCACCAAACAGGTCGAAGAAGCCACGTGTTAGCGTTTTCCGGTTGAAGGGGAAGGTTGTGCCTGGCGTGCAGACGAAAGTGAGGTTCCTTGGACGCTTGGTTCCCGGTTGCAGGAAAGAACCGTTACCGGTTATTCTGGAAGAAGCTATTGATTACATACCAGCGCTTGAGATGCAGGTCCGAGCCATGAGTGCTCTGTTTAACCTACTTTCTGCTTCTGCTTCTGCTTCTGGCGCTGGCTCAAGTTCCGAACCAGCGCCACCTAGCTCATAG 663 0.5279 MASSSSLSPSPSPSSSLISNAVTNTDRSRDSKRRRKKKAQQLKHQQQEEQSNPKWKSQTQQQIYSSKLRQALTRVNHGSSTSRGKAVREAADRALAVTAKGRSRWSRAILTNRLKLKFRKHKRQRVTAPSPPNRSKKPRVSVFRLKGKVVPGVQTKVRFLGRLVPGCRKEPLPVILEEAIDYIPALEMQVRAMSALFNLLSASASASGAGSSSEPAPPSS. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00436 220 MobiDBLite consensus disorder prediction 1 63 - -
Seca12g00436 220 Coils Coil 29 49 - -
Seca12g00436 220 MobiDBLite consensus disorder prediction 45 63 - -
Seca12g00436 220 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 56 200 IPR044660 GO:0006355
Seca12g00436 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 204 IPR036638 GO:0046983
Seca12g00436 220 MobiDBLite consensus disorder prediction 1 25 - -
Seca12g00436 220 CDD bHLH_AtIBH1_like 144 196 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00436 Seca-Chr12 3775836 3776498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00436 51 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 53.374 6.14e-52 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00436 - - gmx:100803765 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00436 12 3775836 3776498 Seca6g04112 6 108772956 108773606 PCT